Mitochondrial proteins evolutionary features on Mammalian Clades (taxons)
Taxa (clade)
Frequency of branches with HIGH residue solvent acessibility change rate and LOW amino acid change rate F(
Na
)
List of protein trees containing branches in Na set
Frequency of branches with LOW residue solvent acessibility change rate and HIGH amino acid change rate F(
Nd
)
List of protein trees containing branches in Nd set
Cliff's delta threshold of Na and Nd branches selection
Branch lengths optimisation method
Protein structure aware (Y - yes; N - no)
Bovidae
0.0186046511627907
ATP5J2; GPX4; MTFR1; MTFR1L
0.0558139534883721
CPT1A; DECR1; ECHS1; MAOB; NARS2; NDUFB11; NLRX1; PPIF; PPM1K; RMDN3; SLC25A10; TCIRG1
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
N
Bovidae
0.00465116279069767
ATP5J2
0.0186046511627907
MAOB; NARS2; NDUFB11; RMDN3
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
N
Bovidae
-
-
0.00465116279069767
NARS2
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
N
Bovidae
0.00613496932515337
GPX4
0.0552147239263804
CPT1A; DECR1; ECHS1; MAOB; NARS2; NLRX1; PPIF; PPM1K; SLC25A10
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Bovidae
-
-
0.0122699386503067
MAOB; NARS2
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Bovidae
-
-
0.00613496932515337
NARS2
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Bovidae
0.0186046511627907
COX7A2L; CYP27A1; GPT2; MTFR1L
0.0418604651162791
APOO; CYP27A1; DECR1; HIGD1A; MAOB; MGARP; MRPL14; MRPS31; PDHX
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Bovidae
0.00930232558139535
COX7A2L; MTFR1L
0.0232558139534884
APOO; CYP27A1; DECR1; MAOB; MRPS31
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Bovidae
0.00465116279069767
COX7A2L
0.00930232558139535
CYP27A1; MAOB
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Bovidae
0.0184049079754601
COX7A2L; CYP27A1; GPT2
0.0368098159509202
CYP27A1; DECR1; HIGD1A; MAOB; MRPL14; PDHX
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Bovidae
0.00613496932515337
COX7A2L
0.0184049079754601
CYP27A1; DECR1; MAOB
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Bovidae
0.00613496932515337
COX7A2L
0.0122699386503067
CYP27A1; MAOB
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Carnivora
0.0535714285714286
AGK; APOOL; COX4I1; CYP27A1; GPT2; HIGD1A; HINT3; MECR; MRPS7; MTCH2; SLC25A5; SLC25A6
0.0267857142857143
ARMC10; ATPAF1; NDUFB1; NME4; PYCR2; QTRT1
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
N
Carnivora
0.0267857142857143
AGK; APOOL; COX4I1; HIGD1A; HINT3; SLC25A5
0.00892857142857143
ARMC10; ATPAF1
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
N
Carnivora
0.00446428571428571
HIGD1A
-
-
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
N
Carnivora
0.0617283950617284
AGK; COX4I1; CYP27A1; GPT2; HIGD1A; HINT3; MECR; MRPS7; SLC25A5; SLC25A6
0.0246913580246914
ARMC10; NME4; PYCR2; QTRT1
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Carnivora
0.0308641975308642
AGK; COX4I1; HIGD1A; HINT3; SLC25A5
0.00617283950617284
ARMC10
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Carnivora
0.00617283950617284
HIGD1A
-
-
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Carnivora
0.0622222222222222
ACOT2; ACSS3; COX6B1; CYP27A1; HINT3; IMMT; MTPAP; OXA1L; PGAM5; RDH13; SLC25A20; SLC25A27; SLC25A5; VDAC3
0.0177777777777778
ACOT2; CCDC90B; MAOA; NME4
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Carnivora
0.0133333333333333
CYP27A1; IMMT; MTPAP
0.00888888888888889
MAOA; NME4
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Carnivora
0.00888888888888889
IMMT; MTPAP
0.00444444444444444
NME4
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Carnivora
0.0674846625766871
ACSS3; COX6B1; CYP27A1; HINT3; MTPAP; PGAM5; RDH13; SLC25A20; SLC25A27; SLC25A5; VDAC3
0.0122699386503067
MAOA; NME4
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Carnivora
0.0122699386503067
CYP27A1; MTPAP
0.0122699386503067
MAOA; NME4
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Carnivora
0.00613496932515337
MTPAP
0.00613496932515337
NME4
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Chiroptera
0.0861111111111111
ALDH7A1; BCL2L13; BDH1; CARS2; COQ3; COQ8A; COQ8B; CYP24A1; CYP27A1; DNA2; GPT2; GPX4; LETMD1; MRPL1; MRPL43; MTERF1; NDUFAF2; NLRX1; PNPT1; PPA2; PYCR2; RDH13; SDHAF3; SUCLA2; TCIRG1; TFB2M; THNSL1; TOMM70; TXNRD2
0.025
AASS; C14orf2; CYP27A1; MTERF4; NME4; OXCT1; PUS1; SMDT1
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
N
Chiroptera
0.0388888888888889
ALDH7A1; BCL2L13; CARS2; COQ8A; COQ8B; MRPL1; MRPL43; PNPT1; PPA2; PYCR2; RDH13; SDHAF3; THNSL1; TXNRD2
0.0166666666666667
AASS; C14orf2; CYP27A1; MTERF4; OXCT1; PUS1
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
N
Chiroptera
0.0222222222222222
BCL2L13; COQ8A; MRPL1; PPA2; PYCR2; RDH13; SDHAF3; THNSL1
0.00277777777777778
PUS1
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
N
Chiroptera
0.0957854406130268
ALDH7A1; BDH1; CARS2; COQ3; CYP24A1; CYP27A1; DNA2; GPT2; GPX4; LETMD1; MRPL1; MRPL43; MTERF1; NLRX1; PNPT1; PPA2; PYCR2; RDH13; SUCLA2; TFB2M; THNSL1; TOMM70; TXNRD2
0.0268199233716475
AASS; CYP27A1; MTERF4; NME4; OXCT1; PUS1
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Chiroptera
0.0383141762452107
ALDH7A1; CARS2; MRPL1; MRPL43; PNPT1; PPA2; PYCR2; RDH13; THNSL1; TXNRD2
0.0191570881226054
AASS; CYP27A1; MTERF4; OXCT1; PUS1
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Chiroptera
0.0191570881226054
MRPL1; PPA2; PYCR2; RDH13; THNSL1
0.00383141762452107
PUS1
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Chiroptera
0.074585635359116
ACAD9; ACAT1; BCL2L13; BDH1; COA7; COQ3; COQ8A; CYP24A1; CYP27A1; FASTKD2; GPAM; GPT2; MCCC1; ME2; MRPL52; MRPS31; MTERF1; MTFR1; NDUFAF2; NLRX1; OXA1L; PPA2; PPM1K; SDHAF3; TCIRG1; TIMM17B; TRMT10C
0.00828729281767956
AASS; PC; PPIF
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Chiroptera
0.0359116022099447
BCL2L13; COQ3; COQ8A; CYP27A1; MRPL52; MRPS31; MTFR1; NDUFAF2; OXA1L; PPA2; PPM1K; SDHAF3; TRMT10C
0.00552486187845304
AASS; PPIF
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Chiroptera
0.0165745856353591
BCL2L13; COQ3; OXA1L; PPA2; PPM1K; SDHAF3
0.00552486187845304
AASS; PPIF
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Chiroptera
0.0572519083969466
ACAD9; ACAT1; BDH1; COA7; COQ3; CYP24A1; CYP27A1; GPT2; MCCC1; ME2; MTERF1; NLRX1; PPA2; PPM1K; TRMT10C
0.00763358778625954
AASS; PPIF
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Chiroptera
0.0190839694656489
COQ3; CYP27A1; PPA2; PPM1K; TRMT10C
0.00763358778625954
AASS; PPIF
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Chiroptera
0.0114503816793893
COQ3; PPA2; PPM1K
0.00763358778625954
AASS; PPIF
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Insectivora
0.177606177606178
AASS; ABAT; ABCB7; ABCB8; ACSL1; ACSL4; ACSS3; AKAP1; ANGEL2; ATAD3B; CYP24A1; CYP27A1; DNA2; FOXRED1; GATB; GLDC; GPAM; HSDL2; L2HGDH; LONP1; MAOB; MAVS; ME2; MGST1; MIPEP; MTIF2; NNT; NOA1; OSGEPL1; PDHB; PITRM1; PNPT1; PTCD1; SFXN1; SFXN3; SFXN5; SLC25A27; SUCLA2; SUCLG2; TIMM44; TOMM70; VARS2; YME1L1; MFN1
0.0231660231660232
ACSS3; APOO; CPT1A; GPX4; SCO2; SLC25A6
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
N
Insectivora
0.0965250965250965
ABAT; ABCB7; ABCB8; ACSL1; ACSL4; ACSS3; AKAP1; ATAD3B; CYP27A1; DNA2; FOXRED1; GATB; LONP1; MAOB; ME2; NOA1; PITRM1; PNPT1; PTCD1; SLC25A27; SUCLA2; SUCLG2; TIMM44; VARS2
0.0115830115830116
APOO; CPT1A; GPX4
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
N
Insectivora
0.0347490347490347
ABCB7; AKAP1; GATB; LONP1; PITRM1; SLC25A27; SUCLA2; SUCLG2; VARS2
0.00386100386100386
GPX4
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
N
Insectivora
0.218085106382979
AASS; ABAT; ABCB7; ABCB8; ACSL1; ACSL4; ACSS3; AKAP1; ANGEL2; ATAD3B; CYP24A1; CYP27A1; DNA2; FOXRED1; GATB; GLDC; HSDL2; L2HGDH; LONP1; MAOB; MAVS; ME2; MGST1; MIPEP; MTIF2; NNT; NOA1; OSGEPL1; PDHB; PNPT1; PTCD1; SLC25A27; SUCLA2; SUCLG2; TIMM44; TOMM70; VARS2; YME1L1; MFN1
0.0265957446808511
ACSS3; CPT1A; GPX4; SCO2; SLC25A6
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Insectivora
0.127659574468085
ABAT; ABCB7; ABCB8; ACSL1; ACSL4; ACSS3; AKAP1; ATAD3B; CYP27A1; DNA2; FOXRED1; GATB; LONP1; MAOB; ME2; NOA1; PNPT1; PTCD1; SLC25A27; SUCLA2; SUCLG2; TIMM44; VARS2
0.0106382978723404
CPT1A; GPX4
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Insectivora
0.0425531914893617
ABCB7; AKAP1; GATB; LONP1; SLC25A27; SUCLA2; SUCLG2; VARS2
0.00531914893617021
GPX4
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Insectivora
0.115830115830116
ABAT; ABCB7; ABCB8; ACSL4; AGK; ATAD3B; CLPX; FOXRED1; GATB; HSDL2; LONP1; MAOB; MAVS; ME2; MGST1; MTIF2; MTX2; NLN; NME4; NNT; NOA1; OXA1L; PAM16; SFXN5; SUCLG2; TIMM44; TOMM70; TXNRD2; UQCRQ; YME1L1
0.0115830115830116
COA3; CPT1A; PTCD3
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Insectivora
0.0772200772200772
ABAT; ABCB7; ABCB8; ACSL4; AGK; CLPX; FOXRED1; GATB; HSDL2; MAOB; MAVS; ME2; MTX2; NLN; NME4; NNT; SFXN5; SUCLG2; TIMM44; YME1L1
0.00772200772200772
COA3; CPT1A
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Insectivora
0.027027027027027
ABCB7; ACSL4; GATB; MAOB; MTX2; NLN; TIMM44
0.00772200772200772
COA3; CPT1A
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Insectivora
0.143617021276596
ABAT; ABCB7; ABCB8; ACSL4; AGK; ATAD3B; CLPX; FOXRED1; GATB; HSDL2; LONP1; MAOB; MAVS; ME2; MGST1; MTIF2; NLN; NME4; NNT; NOA1; PAM16; SUCLG2; TIMM44; TOMM70; TXNRD2; UQCRQ; YME1L1
0.0106382978723404
CPT1A; PTCD3
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Insectivora
0.0957446808510638
ABAT; ABCB7; ABCB8; ACSL4; AGK; CLPX; FOXRED1; GATB; HSDL2; MAOB; MAVS; ME2; NLN; NME4; NNT; SUCLG2; TIMM44; YME1L1
0.00531914893617021
CPT1A
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Insectivora
0.0319148936170213
ABCB7; ACSL4; GATB; MAOB; NLN; TIMM44
0.00531914893617021
CPT1A
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Lagomorpha
0.0221130221130221
ABCB8; AIFM3; ALDH1B1; AURKAIP1; COA6; ETFB; FOXRED1; PDK1; PNPT1
0.0540540540540541
ATP5F1; C12orf65; C5orf63; COQ5; CPT1A; CYP24A1; CYP27A1; DAP3; DARS2; ETFA; FXN; LARS2; MGST1; MRPL40; MTPAP; NDUFB6; NT5DC3; OGDH; PDHA1; PPM1K; SHMT2
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
N
Lagomorpha
0.0122850122850123
ABCB8; AIFM3; ALDH1B1; COA6; PDK1
0.0368550368550369
ATP5F1; C12orf65; C5orf63; COQ5; CPT1A; DAP3; DARS2; FXN; LARS2; MGST1; MRPL40; NDUFB6; NT5DC3; PPM1K
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
N
Lagomorpha
0.00491400491400491
AIFM3; COA6
0.0147420147420147
C12orf65; C5orf63; DAP3; LARS2; NT5DC3; PPM1K
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
N
Lagomorpha
0.0204081632653061
ABCB8; AIFM3; ALDH1B1; ETFB; FOXRED1; PNPT1
0.0680272108843537
ATP5F1; C12orf65; C5orf63; COQ5; CPT1A; CYP24A1; CYP27A1; DAP3; DARS2; ETFA; FXN; LARS2; MGST1; MTPAP; NT5DC3; OGDH; PDHA1; PPM1K; SHMT2
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Lagomorpha
0.0102040816326531
ABCB8; AIFM3; ALDH1B1
0.0442176870748299
ATP5F1; C12orf65; C5orf63; COQ5; CPT1A; DAP3; DARS2; FXN; LARS2; MGST1; NT5DC3; PPM1K
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Lagomorpha
0.00340136054421769
AIFM3
0.0204081632653061
C12orf65; C5orf63; DAP3; LARS2; NT5DC3; PPM1K
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Lagomorpha
0.0147420147420147
ACSL1; AIFM3; ALDH1B1; CPT1A; CYP27A1; NDUFV3
0.0368550368550369
ACO2; ACOT2; AK3; BDH1; DAP3; DECR1; FASTK; HIGD1A; MGARP; MRPL9; MTHFD1L; PARS2; PTPMT1; RPUSD4
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Lagomorpha
0.00245700245700246
ALDH1B1
0.00982800982800983
ACO2; ACOT2; DECR1; FASTK
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Lagomorpha
0.00245700245700246
ALDH1B1
0.00737100737100737
ACO2; ACOT2; FASTK
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Lagomorpha
0.0170068027210884
ACSL1; AIFM3; ALDH1B1; CPT1A; CYP27A1
0.0408163265306122
ACO2; AK3; BDH1; DAP3; DECR1; HIGD1A; MRPL9; MTHFD1L; PARS2; PTPMT1; RPUSD4
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Lagomorpha
0.00340136054421769
ALDH1B1
0.00680272108843537
ACO2; DECR1
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Lagomorpha
0.00340136054421769
ALDH1B1
0.00340136054421769
ACO2
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Primates
0.0541922290388548
ACSS3; ARMC10; ATAD1; BCL2L13; C1QBP; CHCHD2; COX7A2L; CPT1A; DECR1; DHX30; ECHS1; FASTK; FASTKD2; FASTKD3; FXN; GDAP1; GPAM; GPX4; GUF1; HADH; HSDL1; HTRA2; IMMP2L; IMMT; IVD; LONP1; MCCC2; ME2; MRPS35; MTFR1L; MTHFD1L; MTIF2; MUT; NDUFA4; NLRX1; NME4; NUBPL; PARS2; PDK3; POLRMT; SIRT5; SLC25A20; SLC25A27; SLC25A32; SLC25A44; TBRG4; THNSL1; TOP1MT; TUFM
0.0316973415132924
ACSS3; AK4; ALDH7A1; BDH1; CMC2; COQ8B; COX17; COX4I1; DARS2; GRSF1; HSDL2; MCCC2; MDH2; MRPL1; MRPS26; MT-CO1; MT-ND4L; NDUFB4; NUBPL; OCIAD2; OXCT1; PDHX; PPOX; SIRT5; SLC25A3; SLC25A36; SLC25A42; SLC25A5; SUCLG2; TTC19
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
N
Primates
0.0245398773006135
CHCHD2; CPT1A; FASTKD3; GDAP1; GPX4; GUF1; HSDL1; HTRA2; IMMP2L; IMMT; IVD; LONP1; MCCC2; MRPS35; MTHFD1L; MUT; NDUFA4; PDK3; POLRMT; SLC25A20; SLC25A27; TBRG4; THNSL1
0.016359918200409
ACSS3; ALDH7A1; COQ8B; COX4I1; DARS2; MCCC2; MRPL1; MRPS26; MT-CO1; NDUFB4; NUBPL; OCIAD2; SIRT5; SLC25A3; SLC25A36; SLC25A42
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
N
Primates
0.0143149284253579
CHCHD2; GDAP1; GPX4; HSDL1; HTRA2; IMMP2L; MTHFD1L; MUT; NDUFA4; PDK3; SLC25A20; SLC25A27; THNSL1
0.00306748466257669
COQ8B; NUBPL; SIRT5
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
N
Primates
0.0523415977961433
ACSS3; ARMC10; ATAD1; COX7A2L; CPT1A; DECR1; DHX30; ECHS1; FXN; GDAP1; GPX4; GUF1; HADH; HSDL1; HTRA2; IVD; LONP1; MCCC2; ME2; MTHFD1L; MTIF2; MUT; NLRX1; NME4; NUBPL; PARS2; POLRMT; SIRT5; SLC25A20; SLC25A27; SLC25A32; SLC25A44; THNSL1; TOP1MT; TUFM
0.034435261707989
ACSS3; AK4; ALDH7A1; BDH1; COX17; COX4I1; DARS2; GRSF1; HSDL2; MCCC2; MDH2; MRPL1; MT-CO1; NUBPL; OXCT1; PDHX; PPOX; SIRT5; SLC25A3; SLC25A36; SLC25A42; SLC25A5; SUCLG2; TTC19
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Primates
0.0206611570247934
CPT1A; GDAP1; GPX4; GUF1; HSDL1; HTRA2; IVD; LONP1; MCCC2; MTHFD1L; MUT; POLRMT; SLC25A20; SLC25A27; THNSL1
0.0165289256198347
ACSS3; ALDH7A1; COX4I1; DARS2; MCCC2; MRPL1; MT-CO1; NUBPL; SIRT5; SLC25A3; SLC25A36; SLC25A42
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Primates
0.012396694214876
GDAP1; GPX4; HSDL1; HTRA2; MTHFD1L; MUT; SLC25A20; SLC25A27; THNSL1
0.00275482093663912
NUBPL; SIRT5
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Primates
0.0508646998982706
ABCB8; ACO2; ACSS3; ALDH6A1; ARMC10; ATP5SL; BDH1; CMC2; COX16; COX7A2L; CPT1A; CYP27A1; DAP3; DECR1; DHX30; FASTK; FASTKD2; FASTKD3; FKBP8; GCAT; GDAP1; GLUD1; HADHA; HIGD1A; HINT3; HSDL1; HTRA2; IVD; MGARP; MRPL20; MTIF2; MUT; NLRX1; NT5DC3; NUBPL; OXA1L; PAM16; PDHB; PUS1; SLC25A42; TCIRG1; THNSL1; TIMM17B; TIMM50; TMEM70; TSPO; TUFM
0.00915564598168871
CCDC90B; CMC2; DHODH; HK1; MINOS1; MT-ND4L; OCIAD1; PDHX; TBRG4
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Primates
0.0284842319430315
ACO2; ARMC10; ATP5SL; BDH1; COX16; COX7A2L; CYP27A1; DAP3; DECR1; FASTK; GCAT; GDAP1; GLUD1; HADHA; HIGD1A; HSDL1; IVD; MGARP; MRPL20; MUT; NLRX1; NT5DC3; PAM16; PDHB; PUS1; TCIRG1; TIMM50; TUFM
0.00610376398779247
CCDC90B; CMC2; DHODH; MINOS1; PDHX; TBRG4
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Primates
0.0122075279755849
BDH1; COX7A2L; DAP3; GDAP1; HIGD1A; HSDL1; IVD; MGARP; MRPL20; MUT; PAM16; TCIRG1
0.00203458799593082
CMC2; PDHX
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Primates
0.0547945205479452
ABCB8; ACO2; ACSS3; ALDH6A1; ARMC10; ATP5SL; BDH1; COX7A2L; CPT1A; CYP27A1; DAP3; DECR1; DHX30; FKBP8; GCAT; GDAP1; GLUD1; HADHA; HIGD1A; HINT3; HSDL1; HTRA2; IVD; MRPL20; MTIF2; MUT; NLRX1; NT5DC3; NUBPL; PAM16; PDHB; PUS1; SLC25A42; THNSL1; TIMM50; TSPO; TUFM
0.00410958904109589
DHODH; HK1; PDHX
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Primates
0.0328767123287671
ACO2; ARMC10; ATP5SL; BDH1; COX7A2L; CYP27A1; DAP3; DECR1; GCAT; GDAP1; GLUD1; HADHA; HIGD1A; HSDL1; IVD; MRPL20; MUT; NLRX1; NT5DC3; PAM16; PDHB; PUS1; TIMM50; TUFM
0.00273972602739726
DHODH; PDHX
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Primates
0.0136986301369863
BDH1; COX7A2L; DAP3; GDAP1; HIGD1A; HSDL1; IVD; MRPL20; MUT; PAM16
0.00136986301369863
PDHX
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Rodentia
0.0374037403740374
ACAT1; ACO2; AGK; ALDH7A1; ARMC10; ATAD1; AURKAIP1; CARS2; CHCHD4; DHX30; HK1; ME2; MTFP1; MTX1; MUL1; NDUFA1; NDUFA4; NDUFB6; NDUFV1; NLRX1; NME4; OXCT1; PAM16; PCK2; PDHX; PDK1; PITRM1; PPIF; PPM1K; SFXN2; TFAM; TIMM17B; UQCRC1; VARS2
0.0418041804180418
ABCB7; ABCB8; ABHD11; ALDH5A1; ALDH7A1; BCL2L1; BDH1; BNIP3L; CPT1A; DECR1; DHTKD1; FAM136A; FAM210A; FASTKD3; FXN; GPX4; GRSF1; LETMD1; MALSU1; MRPL21; MRPS11; MRPS22; MRPS35; MTFR1L; NME4; OXCT1; PPA2; RMDN3; SARDH; SIRT5; SLC25A10; STARD7; TBRG4; TCIRG1; TOMM70; TRNT1; TXNRD2
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
N
Rodentia
0.022002200220022
AGK; ALDH7A1; ARMC10; ATAD1; DHX30; MTFP1; MUL1; NDUFA1; NDUFA4; NDUFB6; NDUFV1; NME4; PAM16; PCK2; PDHX; PPIF; SFXN2; TFAM; TIMM17B; UQCRC1
0.0286028602860286
ABCB7; ABHD11; ALDH5A1; ALDH7A1; BCL2L1; BNIP3L; CPT1A; DECR1; FAM136A; FAM210A; FXN; GPX4; GRSF1; LETMD1; MALSU1; MRPL21; MRPS11; MRPS22; MRPS35; NME4; SARDH; SIRT5; TBRG4; TCIRG1; TRNT1; TXNRD2
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
N
Rodentia
0.0143014301430143
AGK; ARMC10; DHX30; MUL1; NDUFA1; NDUFA4; NDUFB6; NDUFV1; NME4; PCK2; PDHX; SFXN2; UQCRC1
0.0121012101210121
ABHD11; ALDH5A1; ALDH7A1; BCL2L1; CPT1A; FAM210A; GPX4; MRPS11; SARDH; SIRT5; TXNRD2
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
N
Rodentia
0.0353982300884956
ACAT1; ACO2; AGK; ALDH7A1; ARMC10; ATAD1; CARS2; CHCHD4; DHX30; HK1; ME2; MUL1; NDUFV1; NLRX1; NME4; OXCT1; PAM16; PCK2; PDHX; PPIF; PPM1K; TFAM; UQCRC1; VARS2
0.0412979351032448
ABCB7; ABCB8; ABHD11; ALDH5A1; ALDH7A1; BCL2L1; BDH1; BNIP3L; CPT1A; DECR1; DHTKD1; FXN; GPX4; GRSF1; LETMD1; MALSU1; MRPS11; NME4; OXCT1; PPA2; SARDH; SIRT5; SLC25A10; STARD7; TOMM70; TRNT1; TXNRD2
0.7
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Rodentia
0.0206489675516224
AGK; ALDH7A1; ARMC10; ATAD1; DHX30; MUL1; NDUFV1; NME4; PAM16; PCK2; PDHX; PPIF; TFAM; UQCRC1
0.028023598820059
ABCB7; ABHD11; ALDH5A1; ALDH7A1; BCL2L1; BNIP3L; CPT1A; DECR1; FXN; GPX4; GRSF1; LETMD1; MALSU1; MRPS11; NME4; SARDH; SIRT5; TRNT1; TXNRD2
0.8
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Rodentia
0.0132743362831858
AGK; ARMC10; DHX30; MUL1; NDUFV1; NME4; PCK2; PDHX; UQCRC1
0.0147492625368732
ABHD11; ALDH5A1; ALDH7A1; BCL2L1; CPT1A; GPX4; MRPS11; SARDH; SIRT5; TXNRD2
0.9
heterotachy
Rate variation across sites (3 categories) and lineages
Y
Rodentia
0.0437158469945355
AASS; ACAT1; ACO2; ARMC10; BNIP3L; COX6B1; DHX30; DLAT; ECHS1; GCAT; HK1; HSPA9; IMMP2L; IVD; MRPL1; MRPS31; MRPS9; MTFP1; MTPAP; MUL1; NDUFA1; NDUFA4; NDUFB6; NDUFC2; NDUFV1; NDUFV2; NLRX1; PAM16; PCK2; PDHX; PRELID1; PYCR2; RPUSD4; SCO2; SFXN2; SLC25A20; TFAM; TIMM17B; TUFM
0.0349726775956284
ABCB8; ACAA2; ACOT2; ARMC10; BDH1; CYP27A1; DECR1; FASTK; FASTKD2; MAOB; MCU; ME2; MECR; MTHFD1L; MTPAP; NLRX1; OTC; PCK2; PDHA1; POLRMT; PPIF; SFXN2; SLC25A42; SUCLG2; SUPV3L1; TOMM70; TST
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Rodentia
0.0240437158469945
AASS; ARMC10; COX6B1; DHX30; MRPL1; MRPS9; MTFP1; MUL1; NDUFA4; NDUFB6; NDUFV1; NDUFV2; NLRX1; PAM16; PCK2; PDHX; PRELID1; RPUSD4; SFXN2; SLC25A20; TFAM; TIMM17B
0.0153005464480874
ACAA2; ACOT2; MAOB; ME2; MECR; NLRX1; OTC; PCK2; SFXN2; SLC25A42; SUCLG2; TOMM70; TST
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Rodentia
0.0163934426229508
ARMC10; COX6B1; DHX30; MRPS9; MTFP1; MUL1; NDUFA4; NDUFB6; NDUFV1; NDUFV2; PCK2; PRELID1; RPUSD4; SFXN2; TFAM
0.00437158469945355
NLRX1; OTC; PCK2; SFXN2
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
N
Rodentia
0.0439882697947214
AASS; ACAT1; ACO2; ARMC10; BNIP3L; COX6B1; DHX30; DLAT; ECHS1; GCAT; HK1; HSPA9; IVD; MRPL1; MRPS9; MTPAP; MUL1; NDUFV1; NDUFV2; NLRX1; PAM16; PCK2; PDHX; PYCR2; RPUSD4; SCO2; SLC25A20; TFAM; TUFM
0.0351906158357771
ABCB8; ACAA2; ARMC10; BDH1; CYP27A1; DECR1; MAOB; ME2; MECR; MTHFD1L; MTPAP; NLRX1; OTC; PCK2; PDHA1; POLRMT; PPIF; SLC25A42; SUCLG2; TOMM70; TST
0.6
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Rodentia
0.0234604105571848
AASS; ARMC10; COX6B1; DHX30; MRPL1; MRPS9; MUL1; NDUFV1; NDUFV2; NLRX1; PAM16; PCK2; PDHX; RPUSD4; SLC25A20; TFAM
0.0175953079178886
ACAA2; MAOB; ME2; MECR; NLRX1; OTC; PCK2; SLC25A42; SUCLG2; TOMM70; TST
0.7
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y
Rodentia
0.0146627565982405
ARMC10; COX6B1; DHX30; MRPS9; MUL1; NDUFV1; NDUFV2; PCK2; RPUSD4; TFAM
0.00439882697947214
NLRX1; OTC; PCK2
0.8
site partitioning
Edge-unlinked branch lengths between 8 alignment site partitions
Y