Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCINP00000004184pdb,1ohw,B,#141491053.54
ENSRROP00000026624pdb,4y0h,A,#139460092.075
ENSCINP00000004184pdb,4y0d,D,#141491053.761
ENSONIP00000015824pdb,1ohw,C,#1103561071.895
ENSAPLP00000012125pdb,4y0d,B,#115475089.588
ENSRROP00000026624pdb,4y0h,D,#139460092.075
ENSGACP00000006228pdb,1ohv,D,#139498071.739
ENSPSIP00000007444pdb,4y0d,B,#137500087.931
ENSDORP00000020248pdb,1ohy,C,#139499092.408
ENSHGLP00000008371pdb,1ohv,D,#139499093.926
ENSECAP00000021263pdb,4y0d,A,#139512085.865

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1740.5860.240.5130.3270.16

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6952526799387440.04747320061255740.009188361408882080.0030627871362940300.0015313935681470100.243491577335375

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)