Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSOGAP00000013921pdb,3nh9,A,#1558826094.796
ENSCAPP00000004105pdb,3nh9,A,#1471739093.309
ENSLAFP00000007574pdb,3nh6,A,#1560828095.167
ENSTTRP00000009513pdb,3nh6,A,#1560828093.68
ENSMICP00000000701pdb,3nh9,A,#1556824095.167
ENSOARP00000021389pdb,3nh6,A,#1560828093.68
ENSNGAP00000012042pdb,3nh6,A,#1558826094.796
ENSTTRP00000009513pdb,3nh9,A,#1560828093.68
ENSOGAP00000013921pdb,3nh6,A,#1558826094.796
ENSFDAP00000015660pdb,3nh6,A,#1558826093.309
ENSRNOP00000025627pdb,3nh6,A,#1558826093.68

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1020.2540.6440.2160.380.404

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4875267284390590.1012116892373490.0149679258731290.006414825374198150.003563791874554530.002851033499643620.001425516749821810.382038488952245

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)