Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSDORP00000000132pdb,3nh6,A,#1558826094.424
ENSCCAP00000018711pdb,3nh6,A,#1558827094.815
ENSOCUP00000012983pdb,3nh9,A,#1558826093.68
MGP_SPRETEiJ_P0019416pdb,3nh9,A,#1558826093.68
ENSCAPP00000004105pdb,3nh9,A,#1471739093.309
ENSMLEP00000031656pdb,3nh9,A,#1571839099.628
ENSNGAP00000012042pdb,3nh6,A,#1558826094.796
ENSCLAP00000013126pdb,3nh9,A,#1558826094.052
ENSDORP00000000132pdb,3nh9,A,#1558826094.424
ENSOARP00000021389pdb,3nh9,A,#1560828093.68
ENSPCOP00000031613pdb,3nh9,A,#1558826095.539

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0550.2780.6670.0080.5910.401

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4966555183946490.1747491638795990.0484949832775920.01505016722408030.005852842809364550.002508361204013380.0008361204013377930.255852842809365

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)