Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSFALP00000006616pdb,2wtn,A,#1502419.03e-1328.155
ENSFALP00000006616pdb,2wtm,A,#1502419.88e-1328.155
ENSFALP00000006616pdb,2wtn,B,#1502419.88e-1328.155
ENSFALP00000006616pdb,2wtm,C,#1502411.04e-1228.155
ENSXETP00000020196pdb,1wom,B,#1551631.31e-1036.207
ENSXETP00000020196pdb,1wom,A,#1551631.44e-1036.207
ENSFALP00000006616pdb,3pf8,B,#1622322.23e-1029.508
ENSGMOP00000016036pdb,2wtn,A,#1552442.41e-1027.273
ENSGMOP00000016036pdb,2wtm,C,#1552442.48e-1027.273
ENSGMOP00000016036pdb,2wtm,A,#1552442.65e-1027.273
ENSGMOP00000016036pdb,2wtn,B,#1552442.65e-1027.273

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0650.1430.7910.130.6110.259

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4285714285714290.1157323688969260.009041591320072330.003616636528028930.00180831826401447000.44122965641953

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)