Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSGMOP00000007549pdb,3bf7,B,#1453082.45e-4633.333
ENSGMOP00000007549pdb,3bf7,A,#1453082.6e-4633.333
ENSGMOP00000007549pdb,3bf8,B,#1453081.95e-4532.955
ENSGMOP00000007549pdb,3bf8,A,#1453082.18e-4532.955
ENSPSIP00000004868pdb,3bf7,A,#1182641.36e-4436.842
ENSPSIP00000004868pdb,3bf7,B,#1182641.38e-4436.842
MGP_SPRETEiJ_P0073998pdb,3bf7,B,#1613064.08e-4437.398
MGP_SPRETEiJ_P0073998pdb,3bf7,A,#1613064.33e-4437.398
ENSXETP00000017026pdb,3bf7,B,#1382869.38e-4434.94
ENSXETP00000017026pdb,3bf7,A,#1382861.1e-4334.94
ENSPSIP00000004868pdb,3bf8,B,#1182641.13e-4336.437

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.10.1220.7780.140.5820.278

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5189573459715640.1729857819905210.030805687203791500.009478672985781990.0142180094786730.0047393364928910.248815165876777

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)