Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSHGLP00100002081pdb,2ibu,C,#111403091.603
ENSMLUP00000010118pdb,2iby,C,#114408091.899
ENSFCAP00000011529pdb,2ibw,B,#137427086.189
ENSPMAP00000000144pdb,2ib8,B,#112403077.041
ENSOGAP00000015448pdb,2ibu,D,#137428091.327
ENSTBEP00000006253pdb,2ib7,B,#136425082.353
ENSPCAP00000010555pdb,2ib7,D,#135312092.086
ENSHGLP00100002081pdb,2ib8,D,#111403091.858
ENSPMAP00000000144pdb,2ibu,C,#110403076.65
ENSMEUP00000007321pdb,2ib8,B,#157394079.827
ENSDORP00000021507pdb,2ibw,C,#135427086.514

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.2010.5080.2910.190.5480.262

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.2409046214355950.1937069813176010.006882989183874140.006882989183874140.001966568338249750.004916420845624390.004916420845624390.539823008849557

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)