Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSETEP00000008818pdb,2a1t,A,#1163452090.345
ENSGACP00000021809pdb,1egc,C,#139423079.74
ENSOCUP00000026297pdb,1egd,C,#135398092.033
ENSCGRP00001013936pdb,1egc,C,#135421089.147
ENSOANP00000028694pdb,1ege,C,#135399090.959
ENSVPAP00000001305pdb,1ege,A,#126442083.971
ENSCGRP00001013936pdb,1udy,C,#136420087.792
ENSTGUP00000016999pdb,3mdd,B,#14422079.952
ENSBTAP00000033383pdb,1egd,D,#136420092.727
ENSCHOP00000001174pdb,1udy,C,#134447080.241
ENSCGRP00001013936pdb,2a1t,A,#135420089.637

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.4270.2950.2780.3310.4280.24

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6034482758620690.04231974921630090.01253918495297810.02351097178683390.02351097178683390.009404388714733540.006269592476489030.278996865203762

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)