Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSPVAP00000002123pdb,1jqi,A,#124407074.74
ENSONIP00000014344pdb,2vig,A,#182459075.926
ENSCAFP00000015398pdb,1jqi,B,#130413091.927
ENSCINP00000001630pdb,2vig,A,#135412075.661
ENSPCAP00000002252pdb,2vig,A,#134390090.859
ENSOPRP00000004052pdb,2vig,A,#1121412091.438
ENSPFOP00000016946pdb,2vig,A,#127405076.517
ENSLAFP00000000406pdb,1jqi,B,#130411087.76
ENSSSCP00000040335pdb,2vig,A,#134412092.084
ENSPVAP00000002123pdb,2vig,A,#130408074.406
ENSAMEP00000008908pdb,1jqi,B,#130413092.708

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.4930.3030.2040.6270.2010.172

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4329268292682930.02743902439024390.009146341463414630.003048780487804880.003048780487804880.004573170731707320.003048780487804880.516768292682927

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)