Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSLOCP00000009977pdb,2jif,C,#160436076.127
ENSMAUP00000004167pdb,2jif,A,#151431083.202
ENSMOCP00000015586pdb,2jif,B,#156432084.35
ENSORLP00000011968pdb,2jif,D,#155434073.684
ENSOCUP00000004623pdb,2jif,B,#1105481088.329
ENSJJAP00000001043pdb,2jif,B,#154398074.271
ENSMAUP00000004167pdb,2jif,C,#155431083.024
ENSGMOP00000020451pdb,2jif,B,#138414075.332
ENSMMUP00000035560pdb,2jif,C,#156432096.286
ENSOCUP00000004623pdb,2jif,D,#1101481088.451
ENSMEUP00000009723pdb,2jif,D,#138417077.69

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.2390.3110.450.2850.4280.287

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.604100946372240.06624605678233440.007886435331230280.0047318611987381700.0063091482649842300.310725552050473

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)