Protein ACADVL

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
E04F6.5a.1	pdb,4n5f,A,#1	87	441	3.24e-75	41.127
FBpp0311550	pdb,4n5f,A,#1	91	446	7.77e-74	39.607
ENSGACP00000025548	pdb,2cx9,D,#1	106	476	8.93e-72	39.305
ENSGACP00000025548	pdb,2cx9,B,#1	106	476	8.93e-72	39.305
ENSGACP00000025548	pdb,2cx9,A,#1	106	476	8.93e-72	39.305
ENSGACP00000025548	pdb,2cx9,C,#1	106	476	8.93e-72	39.305
ENSGACP00000025548	pdb,2d29,B,#1	106	476	1.06e-71	39.305
ENSGACP00000025548	pdb,1ws9,A,#1	106	476	1.06e-71	39.305
ENSGACP00000025548	pdb,1ws9,B,#1	106	476	1.06e-71	39.305
ENSGACP00000025548	pdb,2d29,A,#1	106	476	1.06e-71	39.305
ENSJJAP00000005667	pdb,1buc,B,#1	160	467	1.52e-71	43.831

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.087	0.166	0.747	0.393	0.395	0.212

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.475778546712803	0.0709342560553633	0.0181660899653979	0.000865051903114187	0.0103806228373702	0.0198961937716263	0.00951557093425606	0.394463667820069

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000000501 0.075223715 1.570975214 7.166661043 0.000035222 4.937314438 0.430888822 0.342134637 0.007992291 5.038277544 0.052507321 0.020242633 0.273590978 0.237806624 0.042084325 4.159341356 0.220089734 0.143110202 0.223147023 5.102174556 6.842584858 8.787138015 0.000000001 0.014933385 0.272783655 0.107396098 7.717016069 0.006584309 2.156555896 0.000014322 0.048441281 0.197574828 0.676961786 0.427307722 0.448084946 7.935479224 0.007628159 0.003360150 0.101391058 0.000000358 0.159808221 0.297761059 0.183606741 0.189412931 7.513615187 9.126128757 0.026714573 0.000844324 0.047654966 0.314269726 0.281742087 0.145777446 0.002340385 0.059513763 6.849643186 3.641983425 0.005719096 0.031790000 0.001591263 0.043756607 0.321048850 0.306755579 0.066696156 0.521330672 0.000033735 6.527629953 0.022985399 0.000000011 0.000002181 0.000005620 0.394801810 0.140952236 0.010091458 0.038902555 0.549376295 0.001369043 0.308267968 12.917056838 0.000696779 0.039554980 0.167408498 0.003878470 0.133544832 0.000008833 0.000037446 0.666211538 0.120309693 0.000274458 0.194452927 0.000009846 25.864220288 1.508220831 0.489406458 0.000000153 0.326201220 0.000052740 0.001488694 0.008049488 0.708587060 0.938398788 0.347155264 0.861608107 0.000304833 2.914187675 16.529852259 0.332706585 0.000000003 0.000014816 2.087452755 0.000544398 0.000012589 0.000399456 0.000210786 0.001064171 0.000231731 0.602180804 0.000818179 0.000036692 0.000003185 361.630526514 0.020667905 0.732215920 0.000000653 0.000038921 0.009253406 0.002694416 0.878741463 0.000268483 0.000003979 0.000000399 0.000002821 0.000000275 0.000000114 0.000000015 0.092657818 468.846256628 0.000000409 0.000000001 1.418128290 0.000000001 0.000000001 0.000536780 0.000000006 0.000000443 0.199788648 1.648337281 0.000001697 1.865112733 0.000000010 0.000000007 0.000000070 0.000000584 0.000000431 0.001449940 0.000000001 0.000000648 0.000421445 0.019245127 0.000024851 4.532904146 4.648812255 0.000026809 0.000000119 0.000000160 0.000000027 0.000022875 28.397156027 0.002540596 0.040733168 1126.486639625 0.000000257 4.821219762 0.012170992 0.000181257 0.012183103 4.772325406 1.305782227 2.598037556 0.309610787 0.660277134 0.497265824 0.245606257 0.052447093 25.136375238 21.943539557 849.438891872 0.098691261 0.005494475 0.000011121 0.013627473 0.000859463 0.164487000 0.080162000 0.073685500 0.095067700 0.085598500 0.094535200 0.063864700 0.078258200 0.078780600 0.078264700 0.052327400 0.035263000 0.014796200 0.001433770 0.000568792 0.000522403 0.000416199 0.000424039 0.000684556