Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSLACP00000002727pdb,2ib7,C,#132422081.586
ENSPFOP00000012581pdb,4c2k,D,#11394073.858
ENSNGAP00000022585pdb,2ib8,D,#132424089.313
ENSSSCP00000025827pdb,2ibu,A,#136426091.816
ENSETEP00000012686pdb,1wl4,A,#14396073.537
ENSAMXP00000006585pdb,2iby,C,#126417080.357
ENSAMXP00000006585pdb,2ib7,C,#127417080.563
ENSMLUP00000010118pdb,2ib7,D,#114408092.152
ENSFDAP00000015703pdb,2ib9,D,#135427091.094
ENSPFOP00000015264pdb,2ib7,C,#129420080.102
ENSPCOP00000022693pdb,2ibu,A,#137427092.072

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1970.5410.2620.1380.6590.203

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3061968408262450.189550425273390.004860267314702310.007290400972053460.006075334143377890.008505467800729040.008505467800729040.469015795868773

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)