Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSDORP00000013397pdb,2b3x,A,#13889094.025
ENSSHAP00000010335pdb,2b3y,A,#12890090.214
ENSCPOP00000003403pdb,2b3x,A,#13889093.01
ENSOCUP00000013749pdb,2b3y,A,#12899092.873
ENSPMAP00000001537pdb,2b3y,B,#17893075.536
ENSCPOP00000003403pdb,2b3y,A,#13889093.01
ENSMGAP00000009104pdb,2b3x,A,#12874071.955
ENSLACP00000001046pdb,2b3y,A,#11671073.294
ENSPFOP00000013575pdb,2b3y,B,#16822081.807
ENSLAFP00000019136pdb,2b3x,A,#12899091.648
ENSPCAP00000012375pdb,2b3x,A,#11581089.212

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.4680.3810.150.5070.370.123

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.77709790209790200000.001748251748251750.0008741258741258740.22027972027972

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)