Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCHOP00000007969pdb,2b3x,A,#1221889076.831
ENSPANP00000024358pdb,5acn,A,#129738097.183
ENSSHAP00000011754pdb,1nis,A,#133784094.149
ENSPFOP00000016866pdb,1fgh,A,#131782080.984
ENSAMXP00000015975pdb,1b0m,A,#131781081.758
ENSDARP00000045252pdb,2b3y,A,#12889082.32
ENSMODP00000020675pdb,1amj,A,#132777094.407
ENSAMXP00000009054pdb,1nis,A,#131782083.378
ENSMICP00000012348pdb,5acn,A,#129765088.067
ENSDNOP00000014086pdb,7acn,A,#131786088.904
ENSMLUP00000006198pdb,2b3y,B,#1217970060.08

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0450.230.7250.1350.6710.193

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.2391573729863690.3215613382899630.009293680297397770.02168525402726150.02044609665427510.0006195786864931850.001239157372986370.385997521685254

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)