Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSDARP00000109890pdb,2d1r,A,#11226043.29e-3126.273
ENSACAP00000002577pdb,2d1r,A,#11226054.36e-3127.935
ENSAMXP00000019156pdb,2d1t,A,#1335157.71e-3126.434
ENSDARP00000109890pdb,2d1s,A,#11226048.63e-3126.273
ENSACAP00000002577pdb,2d1s,A,#11226051.36e-3027.935
ENSCINP00000005870pdb,3a9v,A,#12245951.44e-3028.244
ENSCINP00000005870pdb,3ni2,A,#12245951.44e-3028.244
ENSAMXP00000019156pdb,2d1s,A,#1335151.83e-3025.562
ENSACAP00000002577pdb,2d1t,A,#11226051.89e-3027.935
ENSAMXP00000019156pdb,2d1r,A,#1335151.9e-3025.562
ENSDARP00000109890pdb,2d1t,A,#11226041.99e-3026.273

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0680.1960.7360.0190.2210.76

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.2669801462904910.09926854754440960.02298850574712640.005224660397074190.00261233019853710.007314524555903870.00261233019853710.592998955067921

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)