Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSOARP00000019273pdb,2d1r,A,#11336093.81e-2326.316
ENSLAFP00000016511pdb,2d1s,A,#11336094.44e-2326.22
ENSOARP00000019273pdb,2d1s,A,#11336097.72e-2326.316
ENSLAFP00000016511pdb,2d1t,A,#11336091.22e-2226.016
ENSTGUP00000004473pdb,2d1r,A,#11285991.69e-2227.291
ENSLACP00000004477pdb,2d1r,A,#11275981.7e-2226.819
ENSPSIP00000019638pdb,2d1r,A,#11366061.92e-2225.926
ENSLACP00000004477pdb,2d1s,A,#11275982.1e-2226.819
ENSOARP00000019273pdb,2d1t,A,#11336092.27e-2226.016
ENSTGUP00000004473pdb,2d1s,A,#11285992.52e-2227.291
ENSTGUP00000004473pdb,2d1t,A,#11285992.88e-2227.291

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0940.3220.5840.060.4910.448

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.7127192982456140.06359649122807020.007675438596491230.005482456140350880.0021929824561403500.001096491228070180.207236842105263

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)