Protein AFG3L2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSXMAP00000012901	pdb,2dhr,C,#1	287	736	7.39e-147	53.524
ENSXMAP00000012901	pdb,2dhr,E,#1	287	736	7.39e-147	53.524
ENSXMAP00000012901	pdb,2dhr,A,#1	287	736	7.39e-147	53.524
ENSXMAP00000012901	pdb,4eiw,C,#1	287	736	7.54e-147	53.524
ENSXMAP00000012901	pdb,4eiw,E,#1	287	736	7.54e-147	53.524
ENSXMAP00000012901	pdb,4eiw,A,#1	287	736	7.54e-147	53.524
ENSTNIP00000005640	pdb,4eiw,E,#1	184	638	1.84e-144	52.505
ENSTNIP00000005640	pdb,4eiw,A,#1	184	638	1.84e-144	52.505
ENSTNIP00000005640	pdb,4eiw,C,#1	184	638	1.84e-144	52.505
ENSTNIP00000005640	pdb,2dhr,A,#1	184	638	2.09e-144	52.505
ENSTNIP00000005640	pdb,2dhr,E,#1	184	638	2.09e-144	52.505

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.046	0.099	0.855	0.05	0.662	0.288

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.371887550200803	0.201606425702811	0.0473895582329317	0.029718875502008	0.029718875502008	0.00883534136546185	0.00562248995983936	0.305220883534137

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.030901845 0.834286285 2.314685524 0.000000101 0.000182181 5.471061939 0.000000101 0.093641636 0.004960418 6.086134908 0.000004576 0.035224904 0.293940008 0.164106584 0.033005332 0.116342764 0.270184458 0.130788922 0.140973465 6.239176732 7.712451325 0.000000101 0.035765331 0.092464580 0.322942564 0.122711893 9.578814251 0.053227869 0.000000101 0.021385041 0.044554457 0.188730885 0.072159886 0.229692804 0.062307063 8.647235967 0.000000101 0.015529988 0.093118656 0.014823671 0.109681999 0.280408162 0.430871656 0.005389020 8.039499235 0.000000101 0.006607827 0.004340356 0.060985394 0.176051237 0.154557703 0.189893637 0.007234328 0.002729389 7.206766804 0.000000101 0.008032402 0.010169144 0.021387248 0.045397980 0.229056866 0.093014739 0.137185506 0.172822501 0.010956495 7.546470115 0.000000101 0.001746264 0.050516861 0.000067038 0.093682683 0.072708371 0.041289089 0.051051975 0.092197627 0.207833656 0.012319957 7.296067743 0.000000101 0.000000012 0.000029275 0.000003260 0.004655816 0.000948061 0.149070873 0.000000179 0.042494703 0.002568167 0.042416231 0.000178784 10.154946287 0.000000101 0.000312530 0.000073662 0.063686941 0.000041563 0.045006577 0.999653248 0.088877454 0.516136659 0.099085620 0.004541951 0.003221984 0.180292963 20.912399885 0.000000101 0.000666605 0.000000176 0.696423010 0.224968521 0.027042190 1.357589560 0.000005250 1.010572689 0.359733136 0.888997106 0.164245276 0.088230325 1.784257879 12.336282392 0.000000101 2.229745201 3.524560856 0.782819205 0.023059688 0.587511216 1.175600748 4.169319841 1.764804586 0.204125363 0.742617013 5.750286450 2.565895476 0.091311617 0.223647518 38.498311294 0.000000101 0.350427657 0.000000001 0.000000007 0.165518921 0.253846846 1.838646281 0.187146807 0.038313831 0.000648110 2.480766749 3.655767589 2.142121793 0.208590553 5.753041217 17.357762283 0.005565670 0.000000101 0.128391514 0.000000001 0.000000001 0.478776291 0.020302405 0.218591270 0.004548876 0.000000023 0.000000037 0.193951665 0.020949287 2.835768702 2.213404761 5.422505006 0.000001005 0.000003873 79.879030680 0.000000101 0.076562278 0.000000155 0.257209140 0.859930462 1.207311549 0.093223909 0.002382010 0.758594600 0.036414863 0.295313355 0.673540884 1.566630825 0.904008007 4.540260633 6.877196278 0.008264976 0.103587005 30.375538869 0.000991656 0.133635000 0.087818600 0.075778800 0.096493500 0.068874600 0.089401100 0.059174400 0.065555700 0.066176000 0.065095600 0.056117900 0.061195400 0.053051300 0.013382800 0.002342030 0.000601225 0.000715388 0.001213190 0.002385750