Protein AGK

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMPUP00000013396	pdb,3vzb,A,#1	4	366	0	87.879
ENSCLAP00000019306	pdb,3vzb,A,#1	8	366	0	83.287
ENSPCOP00000010703	pdb,3vzb,A,#1	96	450	0	91.831
ENSDORP00000018834	pdb,3vzb,A,#1	12	368	0	83.473
ENSCAFP00000007560	pdb,3vzb,A,#1	10	367	0	90.782
ENSPANP00000016207	pdb,4l02,A,#1	95	449	0	97.465
ENSMICP00000012169	pdb,4l02,A,#1	96	450	0	89.577
ENSETEP00000012609	pdb,3vzb,A,#1	8	361	0	77.966
ENSOCUP00000023005	pdb,4l02,A,#1	94	446	0	89.518
ENSMAUP00000008812	pdb,4l02,A,#1	8	363	0	82.865
ENSMEUP00000004510	pdb,4l02,A,#1	100	453	0	78.028

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.035	0.061	0.904	0.001	0.155	0.844

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.0606060606060606	0.0853994490358127	0.0405352223534042	0.0306965761511216	0.0247933884297521	0.0192837465564738	0.0121999212908304	0.726485635576545

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.259626786 0.053790387 2.000497816 0.008055180 0.005814352 6.104744934 0.113037290 0.048864386 0.076847932 5.751428422 0.023349761 0.021070081 0.034748245 0.045197388 0.140986769 0.017431280 0.050415193 0.055071241 0.772297529 5.014221954 6.108653975 0.028518499 0.010331679 0.014647951 0.037740841 0.025987629 6.056940390 0.645394962 0.003842275 0.004081151 0.023500983 0.015274082 0.079797128 0.937539585 0.310318106 5.869278321 0.000000021 0.007066559 0.015881760 0.001376546 0.061386644 0.126851826 0.302987078 0.204777234 6.443555214 0.000000021 0.012087482 0.005693470 0.003195306 0.021867051 0.157327655 0.024774426 0.085986929 0.267238415 6.234576327 0.000000021 0.007309166 0.015192100 0.026694006 0.005793200 0.127584346 0.137407542 0.084903515 0.086862660 0.187452243 7.837356730 0.000000021 0.011644872 0.064080348 0.019586251 0.099428356 0.070510035 0.025542896 0.129085784 0.100349043 0.224725707 0.356776219 9.394918294 0.000000021 0.003644478 0.013049097 0.000515813 0.139559162 0.021981046 0.003869211 0.329550205 0.200870768 0.104098553 0.328422581 0.186088824 15.685360159 0.000000021 0.076272773 0.002031300 0.013163128 0.000382860 0.157079217 0.002187141 0.018878950 0.115610195 0.002346277 0.108650438 1.234746337 1.071494729 17.059238169 0.000000021 0.000000053 0.084477719 0.000909917 0.129450449 0.181140429 0.008829054 0.068847977 0.356545744 0.070793101 0.199442272 0.775741554 0.149554263 0.724976504 11.785457126 0.000000021 0.000000020 0.000068868 0.000221725 0.028744223 0.192029070 0.001071645 0.001402338 0.027256082 0.197192037 0.006682690 0.260850767 1.452509439 0.503728992 13.811025300 40.256229086 0.000000021 0.117190983 0.004474536 1.011954992 0.016320910 0.039472500 0.169224966 0.067253184 0.415648580 0.001391417 0.068936493 0.648593894 1.814398642 0.005171999 0.000032577 22.754533327 54.394350738 0.000000021 0.000000001 0.000000120 0.005894342 0.025673002 0.007811865 0.000326511 0.117586511 0.493144807 0.178839367 0.139036108 1.722630908 1.231657587 3.047434763 0.246325290 3.622772904 2.939690399 39.138452685 0.000000021 0.015367418 0.009152786 0.375206345 0.060282082 0.073440116 0.039601854 0.333464876 0.037887547 0.197978313 0.509297710 0.055997801 3.176107749 2.198018023 7.708794194 8.452846613 3.480442056 14.336684425 72.832597096 0.004798850 0.134588000 0.070991500 0.063304100 0.083146100 0.093785800 0.102073000 0.085396700 0.095088500 0.085720500 0.074265600 0.048570300 0.031094600 0.014470400 0.003846970 0.001769120 0.000891019 0.001146890 0.002112090 0.002940220