Protein AKAP1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSORLP00000018953	pdb,4b9w,A,#1	607	721	9.86e-11	36.752
ENSTRUP00000013719	pdb,4b9w,A,#1	602	718	2.58e-10	36.441
ENSTNIP00000001111	pdb,4b9w,A,#1	570	702	2.87e-10	34.532
ENSACAP00000008745	pdb,2diq,A,#1	241	308	3.07e-10	42.029
ENSAMXP00000010753	pdb,4b9w,A,#1	196	302	3.15e-10	34.259
ENSMGAP00000008497	pdb,2diq,A,#1	760	834	3.83e-10	40.789
ENSTSYP00000023422	pdb,4b9w,A,#1	23	125	4.25e-10	33.01
ENSACAP00000008745	pdb,3fdr,A,#1	241	305	4.88e-10	42.424
ENSPSIP00000008455	pdb,2diq,A,#1	752	826	4.94e-10	40.789
ENSCINP00000024931	pdb,2diq,A,#1	91	150	7.06e-10	41.667
ENSGALP00000008930	pdb,4b9w,A,#1	748	856	9.03e-10	36.364

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.017	0.029	0.954	0.034	0.291	0.675

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.234782608695652	0.433201581027668	0.0237154150197628	0.00237154150197628	0.00316205533596838	0.00553359683794466	0.00632411067193676	0.290909090909091

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000011155 0.005219506 2.916258194 0.342843884 0.000000003 8.047883280 20.850740092 0.001534346 0.000771750 6.666628223 35.093921197 0.000000023 0.014166701 0.212171993 0.123002139 36.359255413 0.211913720 0.000741742 0.680413114 6.321609730 6.379446310 185.634781018 0.000000003 0.018929286 0.049643196 0.413381827 5.319680260 0.435798328 27.606440119 0.000000003 0.000102476 0.002167120 0.103803815 1.405756754 0.214945792 4.860321306 43.519554506 0.000000003 0.000000274 0.000002446 0.024748545 0.167364057 0.044589116 0.300210213 4.647955062 13.491432249 0.003621848 0.008635796 0.000000849 0.015651600 0.093885869 0.020156879 0.030571888 0.471224492 3.346912895 3.891535770 0.000832005 0.000000052 0.000000036 0.035527753 0.048212754 0.095111651 0.007686240 0.054474912 0.121878418 3.474478473 4.779578847 0.000000003 0.000000922 0.000000003 0.000259123 0.004573788 0.062698113 0.113242021 0.053778312 0.080531030 0.288398633 4.577239817 1.682382483 0.000000003 0.000000003 0.000000003 0.081342898 0.000607208 0.187345333 0.134709696 0.000504598 0.006525909 0.006313656 0.000580284 8.451569900 0.000011155 0.000000003 0.001125085 1.077383956 0.157630339 0.089461006 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000535139 0.000000047 12.375744568 3.344306331 0.000000003 2.407477190 0.007352326 0.233086356 0.390205871 0.007233034 0.017947074 0.000478925 0.000442293 0.001497888 0.011480367 0.003079999 65.451443316 1359.118068641 1136.168166855 0.000000003 18.870381106 0.008300805 7.432589860 2.106042321 1.491436344 1.182732348 0.354181597 0.687447095 0.378364201 2.402752446 2.350466806 1.182916536 47.050565568 7595.445223353 0.001429806 0.000000003 0.000000003 0.000000003 0.000274642 0.262428160 0.435142023 0.000000004 0.000000178 0.000151129 0.000109151 0.000028559 1.243281599 0.013113379 0.000000054 0.000008173 0.000536623 141.596286657 0.000000003 0.000003866 0.002256086 0.974174904 0.558221118 0.365939493 1.786824437 16.697683702 19.746136165 1.166021063 0.256624898 0.190055089 19.787300745 133.637188428 290.108217093 25.226421511 0.003138007 4880.287982616 0.000000003 0.000001620 0.000356859 1.978912770 1.690547597 3.330384143 18.290438361 3.943561034 66.243560276 16.372916919 0.928812248 1.030923971 0.119474522 0.000000054 0.015843290 10.551164102 374.784088355 60.135377115 0.000008964 0.039680300 0.028978800 0.034682900 0.057684200 0.083693000 0.075727000 0.084866200 0.105211000 0.126170000 0.148698000 0.126651000 0.068561700 0.016586800 0.001862730 0.000092351 0.000089391 0.000311470 0.000106665 0.000337431