Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSACAP00000006616pdb,2bwo,E,#11905885.21e-14548.12
ENSACAP00000006616pdb,2bwo,B,#11905885.21e-14548.12
ENSLOCP00000017031pdb,2bwp,E,#12015967.88e-14549.495
ENSLOCP00000017031pdb,2bwp,A,#12015967.88e-14549.495
ENSLOCP00000017031pdb,2bwp,D,#12015967.88e-14549.495
ENSLOCP00000017031pdb,2bwo,D,#12015968.48e-14549.495
ENSLOCP00000017031pdb,2bwo,B,#12015968.89e-14549.495
ENSLOCP00000017031pdb,2bwo,E,#12015968.89e-14549.495
ENSSHAP00000005108pdb,2bwp,E,#12136089.55e-14550.253
ENSSHAP00000005108pdb,2bwp,A,#12136089.55e-14550.253
ENSSHAP00000005108pdb,2bwp,D,#12136089.55e-14550.253

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0490.1120.840.3380.2840.378

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.4355329949238580.1939086294416240.0162436548223350.002030456852791880.004060913705583760.003045685279187820.004060913705583760.341116751269036

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)