Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSOANP00000004326pdb,3n82,A,#128520073.631
ENSCAFP00000003484pdb,3inl,D,#127443074.101
ENSSHAP00000016655pdb,1a4z,B,#125517073.834
ENSECAP00000022978pdb,2onn,G,#124514065.789
ENSXETP00000032265pdb,3n82,B,#125517070.588
ENSSHAP00000016655pdb,3n81,A,#125517073.428
ENSAMEP00000019746pdb,4kwf,E,#124517072.672
ENSMICP00000008018pdb,4kwf,C,#124517075.101
ENSSARP00000013185pdb,3n83,F,#124517074.899
ENSXETP00000032265pdb,1o9j,C,#125517063.489
ENSSHAP00000016655pdb,3inl,H,#125517073.225

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0580.1620.780.1890.7570.054

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.87609075043630.03839441535776610.005235602094240840.006980802792321120.001745200698080280.01919720767888310.03490401396160560.0174520069808028

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)