Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSGACP00000014952pdb,3rhp,B,#1405902081.526
ENSMFAP00000042058pdb,3rhl,C,#1418914091.348
ENSOGAP00000005249pdb,1ag8,D,#120511064.634
ENSCAFP00000036367pdb,1o02,F,#123501069.311
ENSGMOP00000013163pdb,3rhr,D,#1405901080.885
ENSLACP00000020368pdb,2ono,H,#119504063.061
ENSTBEP00000001265pdb,1o05,F,#19501061.663
ENSCAPP00000000317pdb,4kwg,C,#118466063.75
ENSPEMP00000003271pdb,3rhj,B,#1405902097.39
ENSSHAP00000005188pdb,2onn,A,#124515076.566
ENSXETP00000040642pdb,1a4z,A,#120511063.008

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1110.4280.4610.0070.0680.924

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.1205607476635510.1079439252336450.109813084112150.04532710280373830.01822429906542060.02429906542056070.01495327102803740.558878504672897

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)