Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSCAPP00000018677pdb,4rla,C,#16318082.109
ENSECAP00000021081pdb,1t4p,B,#16318084.395
ENSMEUP00000009111pdb,3thj,A,#16316084.887
ENSOGAP00000012629pdb,1hqg,A,#16319085.714
ENSMODP00000021930pdb,1t4s,A,#16312084.039
ENSCLAP00000014896pdb,3e8z,C,#16312082.085
ENSDORP00000008180pdb,4hww,A,#15319081.905
ENSJJAP00000014207pdb,2aeb,B,#15313091.586
ENSTSYP00000009470pdb,1p8o,B,#16328084.877
ENSDORP00000020350pdb,4ixu,B,#132337094.118
ENSCLAP00000014896pdb,4rla,C,#16318081.47

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0320.1390.8290.0430.6050.352

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.2751572327044030.2327044025157230.04402515723270440.01100628930817610.04088050314465410.02515723270440250.004716981132075470.366352201257862

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)