Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
F54B3.3.2pdb,4ko8,A,#13435331.49e-1430.612
F54B3.3.2pdb,4kod,J,#13435331.62e-1430.612
F54B3.3.2pdb,3hu2,E,#13435331.72e-1430.612
F54B3.3.2pdb,3hu2,D,#13435331.72e-1430.612
F54B3.3.2pdb,3hu2,F,#13435331.72e-1430.612
F54B3.3.2pdb,3hu2,A,#13435331.72e-1430.612
F54B3.3.2pdb,4ko8,B,#13435331.72e-1430.612
F54B3.3.2pdb,3hu2,B,#13435331.72e-1430.612
F54B3.3.2pdb,3hu3,B,#13435331.72e-1430.612
F54B3.3.2pdb,3hu2,C,#13435331.72e-1430.612
F54B3.3.2pdb,1s3s,F,#13435331.79e-1430.612

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0140.0220.9650.0530.5810.366

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3140578265204390.2323030907278170.03389830508474580.01096709870388830.004985044865403790.007976071784646060.008973080757726820.386839481555334

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)