Protein ATP5A1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSSHAP00000020251	pdb,1w0k,C,#1	62	553	0	98.374
ENSCAFP00000011624	pdb,1w0j,C,#1	55	530	0	89.558
ENSPTRP00000087640	pdb,1bmf,C,#1	62	475	0	74.689
ENSAMXP00000015095	pdb,2xnd,B,#1	62	552	0	94.501
ENSSHAP00000017351	pdb,1cow,A,#1	47	443	0	74.165
ENSJJAP00000010588	pdb,1cow,B,#1	67	528	0	78.252
ENSCAFP00000011624	pdb,2xnd,B,#1	61	530	0	89.431
ENSNLEP00000034659	pdb,2wss,A,#1	7	407	0	71.245
ENSSHAP00000009525	pdb,2wss,J,#1	64	549	0	89.095
ENSMICP00000030376	pdb,2jj1,A,#1	67	475	0	68.016
ENSSHAP00000020251	pdb,3oaa,J,#1	72	549	0	58.282

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.241	0.451	0.308	0.444	0.437	0.119

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.611183355006502	0.102730819245774	0.00260078023407022	0.00390117035110533	0	0.0169050715214564	0.00130039011703511	0.261378413524057

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

2.063718516 0.193147855 1.674291704 0.113356020 0.417577500 3.636721337 0.061584512 0.567506650 1.977759239 2.142934461 0.000022187 0.504433322 0.224771658 2.222302404 1.756884139 0.361972047 0.642177051 1.633709030 1.885858679 3.168228195 5.551114786 0.264868033 0.078602799 0.647033275 1.264381730 1.437080464 4.462866370 2.089657473 0.248012246 0.087086603 0.196093461 0.624120219 1.242705415 1.218549302 0.972835917 4.927107567 0.000000024 0.001130787 0.282503247 0.282458625 0.443239318 1.558927956 0.625019322 1.762374121 6.899058139 0.000000006 0.005692178 0.407970896 0.380807833 0.511997216 0.531971358 1.759251978 1.443649965 1.673482974 7.836376954 0.000000006 0.003555226 0.085029199 0.310187939 0.537700227 0.477072794 0.190498401 0.621418061 0.527392635 2.255310550 8.630494490 0.000000006 0.035292848 0.000008324 0.000027581 0.000041209 0.432040973 0.653349478 0.372768301 0.000027269 1.421847317 0.180721694 13.034756385 0.000000006 0.052527408 0.172551882 0.000000001 0.000000004 0.000000006 0.016966637 0.979247811 1.371122429 0.254029595 0.189021347 4.750487541 2.609280385 0.000000006 0.000000000 0.000000001 0.000000001 0.000000001 0.000233692 0.718695679 0.000003943 0.250099537 0.313467707 4.352188864 0.142840257 5.303008424 24.046348485 0.000000006 0.000000000 0.000000020 0.000000004 0.000000025 0.000000051 0.000000389 0.014513017 0.414617793 1.079408379 4.837747161 0.000177726 2.318430806 0.000017775 28.491706526 0.000000006 0.000000006 0.000616534 0.931759166 0.000004279 0.822687841 0.119538642 0.000019886 0.000547377 0.917474029 0.975239206 0.000072193 5.180938628 0.000832065 8.755640989 18.860265964 0.000000006 0.379162972 0.000607957 0.000000001 0.000000421 0.000000001 0.000000001 0.000000002 0.000000003 0.000000055 0.997007827 2.182630084 0.000029487 4.402563168 0.000000008 0.000000018 27.307269408 0.000000006 0.000000000 0.000000001 0.000000001 0.000000001 0.000000003 0.000000001 0.000000004 0.000004076 5.779758747 0.086085835 0.000258139 12.464067389 24.213725952 0.000000008 0.000000756 0.000000268 23.559695167 0.000000006 0.000000000 0.000000086 0.000000976 0.000000867 0.000713660 0.000006644 0.000132924 1.206894026 1.550828652 4.923772148 0.005669807 2.263663057 0.042195838 0.000000097 0.000002914 31.121531152 11.191794250 34.545982923 0.017572600 0.241354000 0.093018400 0.085916300 0.092825700 0.068806900 0.073751800 0.060822500 0.062790600 0.055427400 0.035826800 0.038663400 0.020775000 0.013998300 0.013317700 0.005432320 0.005947940 0.004978460 0.002391540 0.006382880