Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSMFAP00000035499pdb,3oaa,F,#160523071.828
ENSCSAVP00000020004pdb,3oe7,E,#155521074.84
ENSPCAP00000009968pdb,2jdi,F,#160523091.613
ENSLOCP00000009826pdb,3fks,O,#155523079.362
ENSSSCP00000045621pdb,2jj1,F,#160499082.796
ENSSSCP00000045621pdb,2hld,M,#160499066.094
ENSJJAP00000005891pdb,3oe7,F,#142480075.561
ENSCSAVP00000020004pdb,3ofn,X,#155521074.84
ENSCSAVP00000020004pdb,2jdi,D,#158520082.974
YJR121Wpdb,1fx0,B,#144501067.382
ENSCINP00000017546pdb,3oee,X,#149515075.427

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.2180.3670.4150.4890.3310.18

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6542324246771880.09612625538020090.007173601147776180.001434720229555240.004304160688665710.0057388809182209500.230989956958393

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)