Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSOARP00000021057pdb,2cly,D,#11212257.45e-7299.048
ENSOARP00000021057pdb,2cly,A,#11212257.45e-7299.048
ENSFCAP00000017986pdb,2cly,A,#11212255.05e-7096.19
ENSFCAP00000017986pdb,2cly,D,#11212255.05e-7096.19
ENSPCOP00000011726pdb,2cly,A,#11212251.08e-6895.238
ENSPCOP00000011726pdb,2cly,D,#11212251.08e-6895.238
ENSMPUP00000004734pdb,2cly,D,#11212251.63e-6894.286
ENSMPUP00000004734pdb,2cly,A,#11212251.63e-6894.286
ENSMICP00000010914pdb,2cly,A,#11212252.12e-6893.333
ENSMICP00000010914pdb,2cly,D,#11212252.12e-6893.333
ENSPVAP00000009992pdb,2cly,A,#11212252.75e-6894.286

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0950.2430.6620.1350.3580.507

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3435251798561150.1097122302158270.007194244604316550.003597122302158270.00359712230215827000.532374100719424

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)