Protein ATPIF1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSBTAP00000008319	pdb,1gmj,A,#1	44	108	1.72e-38	98.462
ENSSSCP00000023669	pdb,1gmj,A,#1	44	108	9.64e-35	87.692
ENSBTAP00000008319	pdb,1gmj,B,#1	45	104	3.46e-34	98.333
ENSBTAP00000008319	pdb,1gmj,C,#1	45	103	1.63e-33	98.305
ENSPVAP00000016616	pdb,1gmj,A,#1	44	108	3.59e-33	87.692
ENSTTRP00000000040	pdb,1gmj,A,#1	44	107	3.77e-33	89.062
ENSOARP00000003214	pdb,1gmj,A,#1	36	95	1e-32	95
ENSSSCP00000023669	pdb,1gmj,B,#1	45	104	9.31e-32	90
ENSSSCP00000023669	pdb,1gmj,C,#1	45	103	1.13e-31	91.525
ENSTTRP00000000040	pdb,1gmj,B,#1	45	103	5.07e-31	93.22
ENSTTRP00000000040	pdb,1gmj,C,#1	45	103	5.76e-31	93.22

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.04	0.08	0.881	0.076	0.138	0.787

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.308457711442786	0.199004975124378	0.0248756218905473	0.0149253731343284	0.0149253731343284	0.0199004975124378	0.0149253731343284	0.402985074626866

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000002033 0.000224372 4.259055366 1.181183756 0.657972029 4.731187054 0.000964238 0.161530359 1.388600487 6.783602445 0.000187096 0.013983131 0.009098506 0.681474854 2.958085866 0.000018735 0.082049192 0.209812436 0.602942640 4.525127492 6.513177110 0.000891852 0.089890128 0.155427464 0.106182183 0.084689750 6.512484056 1.024617335 0.013885180 0.003800155 0.000658631 1.213764509 0.451746916 1.409459863 0.626884873 5.537049794 4.814483954 0.006196546 0.489307740 0.034132165 0.069380781 0.072372375 0.274055133 1.379720202 4.773670743 0.013225418 0.209629328 0.000004360 0.000041712 0.154721168 1.668000521 0.000267094 0.014408879 1.109264340 3.547556578 0.000006603 0.000368469 0.003419302 0.200713760 0.000005165 0.000062528 0.020986970 0.137575711 0.253706284 1.432497761 3.360629495 0.000000224 0.059624791 0.000005923 0.000000110 0.261634493 0.317161513 0.018726491 0.000000079 0.636870711 0.062230967 0.839665106 4.560785777 0.000000224 0.045736308 0.000000002 0.000000001 0.077662191 0.028731562 0.000000005 0.000002212 0.000003077 0.000017872 0.748479223 1.197128677 3.546384942 0.000000224 0.501008757 0.061114915 0.000000028 0.000000004 0.000000514 0.000000001 0.000000002 0.225246004 0.006574259 0.697113845 0.000000334 0.541402651 5.075235646 0.000000224 0.000000499 0.000000001 0.000000001 0.000000002 0.000000002 0.151494284 0.000000002 0.142255100 0.000000001 0.046421571 0.000000001 1.463249332 4.036926703 5.268049155 0.000000224 0.000002336 0.000000002 0.000000011 0.049055126 0.000001022 0.025257403 0.000000002 0.000000001 0.000000001 0.000000001 0.014830928 2.294811223 2.998047485 8.806861239 8.893546482 0.000000224 0.000000156 0.000000001 0.000000001 0.605652104 0.000000002 0.000000001 0.000000002 0.000000001 0.000000016 0.000000001 0.482013106 0.000000002 0.000000003 0.582176139 0.000000005 25.522942831 0.000000224 0.141334451 0.002444495 0.000000103 0.000000810 4.432231652 0.000000001 0.000000002 0.000000053 0.000000001 0.000000001 0.000000001 0.000000002 0.000000003 0.000000005 5.120753387 0.000000015 14.064417914 0.000030889 0.000000003 0.210690845 0.504181018 0.374301658 2.177659555 0.000000014 0.000000224 1.333825197 0.000049409 0.758911747 0.000000001 0.000000006 0.000000003 1.121280082 1.196963779 0.000000015 6.392569379 52.139436264 0.000446646 0.130061000 0.070696000 0.080363200 0.062415700 0.060601300 0.069414500 0.058792500 0.069328200 0.079390700 0.079022100 0.072336000 0.057824800 0.036824300 0.019530000 0.020993200 0.006661340 0.007291450 0.003244780 0.014762000