Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSRBIP00000005170pdb,2ocl,A,#136289095.669
ENSSBOP00000033037pdb,2ocg,A,#138291096.85
ENSCATP00000017567pdb,2oci,A,#138291096.85
ENSRROP00000006127pdb,2oci,A,#120273095.276
ENSCANP00000006301pdb,2ocl,A,#169322096.063
ENSMLEP00000019164pdb,2oci,A,#151304096.85
ENSMLEP00000019164pdb,2ock,A,#151304096.457
ENSRBIP00000005170pdb,2oci,A,#136289096.063
ENSRBIP00000005170pdb,2ock,A,#136289095.669
ENSRBIP00000005170pdb,2ocg,A,#136289096.063
ENSMLEP00000019164pdb,2ocg,A,#151304096.85

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1320.5160.3520.130.5440.326

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6958904109589040.05205479452054790.03835616438356160.008219178082191780.005479452054794520.0027397260273972600.197260273972603

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)