Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSGGOP00000024690pdb,4ygk,A,#111259097.992
ENSMNEP00000023251pdb,4ht2,C,#131291098.084
ENSPPYP00000020995pdb,3s75,B,#14260097.665
ENSRROP00000020840pdb,4lu3,A,#148307095.769
ENSPCOP00000019252pdb,4kp5,B,#131291090.421
ENSPPYP00000020995pdb,1yo1,A,#13260096.899
ENSPPYP00000020995pdb,4ygl,A,#13260097.287
ENSPPYP00000020992pdb,3w6h,A,#16261096.484
ENSPPYP00000020995pdb,3sax,A,#13260097.674
ENSPCOP00000019252pdb,4qj0,A,#131289090.734
ENSPPYP00000020995pdb,1cak,A,#13260097.287

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0690.1990.7320.0220.0170.961

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.0560.09028571428571430.01828571428571430.0240.01428571428571430.007428571428571430.008571428571428570.781142857142857

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)