Protein CHCHD4

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
YKL195W	pdb,2zxt,A,#1	249	353	1.77e-49	73.333
YKL195W	pdb,3a3c,A,#1	249	353	1.81e-46	71.429
ENSPANP00000010030	pdb,2k3j,A,#1	41	105	5.83e-46	100
ENSSHAP00000003846	pdb,2k3j,A,#1	41	105	1.54e-45	96.923
ENSMGAP00000007853	pdb,2k3j,A,#1	41	105	1.98e-45	98.462
ENSFALP00000013184	pdb,2k3j,A,#1	41	105	2.15e-45	98.462
ENSMODP00000034050	pdb,2k3j,A,#1	41	105	2.51e-45	96.923
ENSNGAP00000007844	pdb,2k3j,A,#1	41	105	2.52e-45	98.462
ENSGALP00000010217	pdb,2k3j,A,#1	41	105	2.71e-45	98.462
ENSAPLP00000013768	pdb,2k3j,A,#1	41	105	2.74e-45	98.462
ENSSSCP00000012368	pdb,2k3j,A,#1	41	105	3.34e-45	96.923

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.062	0.173	0.765	0.011	0.219	0.77

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.200657894736842	0.03125	0	0.00328947368421053	0.00657894736842105	0.00164473684210526	0.00822368421052632	0.748355263157895

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

4.085796462 0.000350520 9.852399737 0.332119784 0.087866788 7.886937958 0.000000031 0.010296541 1.271049091 6.007635464 0.000000031 0.000855702 0.615801171 0.353708534 0.123330726 0.000000031 0.432832651 0.352041809 0.965726989 4.935303162 4.584292187 0.000000031 0.235954585 0.134184441 0.898703032 1.665905351 5.628061939 0.411721708 0.000000031 0.194108886 0.000499522 0.128242279 0.003951528 1.238140898 0.040332373 5.710581925 0.000000031 0.071655793 0.275253017 0.009381985 0.323921794 0.342292862 0.513212014 1.452682698 8.277909213 0.153654433 0.005905123 0.001335914 0.066836002 0.094046452 0.133926800 0.187243751 0.051851934 0.413980161 4.939123522 0.000000031 0.016031988 0.144381565 0.157016304 0.001437735 0.031014186 0.183395793 0.308375104 0.208570510 0.065986228 3.200223811 0.000000031 0.000907596 0.029939956 0.023463691 0.140103347 0.453962239 0.014739878 0.010040395 0.267398682 0.148486949 0.462230969 3.607361279 0.000000031 0.071327821 0.012355678 0.000003603 0.240301169 0.146962096 0.158897381 0.005585744 0.047916085 0.231415276 0.319411725 0.016253918 4.020333046 0.000000031 0.000018704 0.000073488 0.012887401 1.464060809 0.492526055 0.041710852 0.000125200 0.238879724 0.000338403 0.309164665 0.223491883 0.000351051 4.332006349 0.000000031 0.000007325 0.428255097 0.060134165 0.077967108 0.000025133 0.001498178 0.796370844 0.841726037 0.006033566 0.525983272 0.741005294 0.130899892 1.099732001 0.011168185 0.000000031 0.000000003 0.000000003 0.682790324 0.000000003 0.000000003 0.000000003 0.783014502 0.648803898 0.000001342 0.000484967 0.010576600 0.341741403 0.000032160 0.000000005 0.000224302 0.000000031 0.000000003 0.000090917 0.000005966 1.291401030 0.000000003 0.000000003 1.833914125 0.563745599 0.000000047 0.000000643 0.584958152 0.000001815 0.976253046 7.218129833 11.750738100 11.185702610 0.000000031 0.000000003 0.000000003 0.000000003 0.000000003 0.000000004 0.000000003 0.030654631 0.199159158 0.124346143 0.001065252 0.464766578 0.397409580 0.168187061 1.210674329 10.271067099 0.000000032 21.832160223 0.000000031 0.000000003 0.000000003 0.174274575 0.247607401 0.000000091 0.359751907 0.032866470 0.051523931 0.179466870 0.018986870 0.144728193 0.552862584 0.328903980 0.000000005 0.000000021 0.000000032 2.906679768 1.681214671 0.003191740 0.039546000 0.036489700 0.035806600 0.033363300 0.039109200 0.036663600 0.035870600 0.051947900 0.069690300 0.103659000 0.170378000 0.179855000 0.115299000 0.021299700 0.004840130 0.003132320 0.002371190 0.004482860 0.013004600