Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSONIP00000007881pdb,3mt6,P,#1292183.36e-8358.947
ENSONIP00000007881pdb,3mt6,I,#1292183.36e-8358.947
ENSONIP00000007881pdb,3mt6,J,#1292183.36e-8358.947
ENSONIP00000007881pdb,3mt6,M,#1292183.36e-8358.947
ENSONIP00000007881pdb,3mt6,X,#1292183.36e-8358.947
ENSONIP00000007881pdb,1yg6,D,#1292184.01e-8358.947
ENSONIP00000007881pdb,1yg6,E,#1292184.01e-8358.947
ENSONIP00000007881pdb,1yg6,A,#1292184.01e-8358.947
ENSONIP00000007881pdb,1yg6,F,#1292184.01e-8358.947
ENSTRUP00000031952pdb,1yg6,B,#1302194.63e-8360
ENSTRUP00000031952pdb,1yg6,G,#1302194.63e-8360

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0270.0840.890.1260.5180.356

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.480.1942857142857140.08857142857142860.03428571428571430.02285714285714290.01428571428571430.01142857142857140.154285714285714

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)