Protein CMC4

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSCSAP00000002836	pdb,1hp8,A,#1	1	68	2.02e-42	97.059
ENSCSAP00000002836	pdb,2hp8,A,#1	1	68	2.02e-42	97.059
ENSOCUP00000016653	pdb,2hp8,A,#1	1	68	5.04e-41	91.176
ENSOCUP00000016653	pdb,1hp8,A,#1	1	68	5.04e-41	91.176
ENSMICP00000045050	pdb,1hp8,A,#1	1	68	1.06e-40	91.176
ENSMICP00000045050	pdb,2hp8,A,#1	1	68	1.06e-40	91.176
MGP_PahariEiJ_P0089629	pdb,2hp8,A,#1	1	68	1.55e-39	89.706
MGP_PahariEiJ_P0089629	pdb,1hp8,A,#1	1	68	1.55e-39	89.706
ENSNGAP00000020010	pdb,2hp8,A,#1	1	68	2.74e-39	89.706
ENSNGAP00000020010	pdb,1hp8,A,#1	1	68	2.74e-39	89.706
ENSDNOP00000015631	pdb,1hp8,A,#1	1	67	6.4e-39	91.045

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.082	0.446	0.471	0.313	0.486	0.201

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.797619047619048	0.0119047619047619	0	0	0	0	0.0833333333333333	0.107142857142857

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

3.974541017 0.000000009 3.687167357 0.000000009 2.552182579 1.711078727 0.000000009 1.645815538 4.384950048 0.185836735 0.000000009 0.000000055 0.000000002 1.857356315 0.000000003 0.000000009 0.000139267 1.559713334 2.913493425 3.689896101 8.412315284 0.000000009 0.503688372 0.000000002 0.000000466 0.000000003 6.039718937 1.849597849 0.000000009 0.000000002 0.000000002 0.000000002 1.332975320 2.551690938 0.000000014 0.039705545 0.000000009 0.000000002 0.000000002 0.000000002 0.000000013 0.006436560 2.667764200 3.719771162 7.343522723 0.000000009 0.000000002 0.000000002 0.450561286 0.000000003 1.776082817 0.000000006 2.097837717 0.788970682 3.534238880 0.000000009 0.000000002 0.000000002 0.025061407 0.005912907 0.000003113 0.000008138 0.000922865 5.318540559 2.690213703 3.272816815 0.000000009 0.233694724 0.000000002 0.000000152 0.000907717 0.007154236 0.000001263 0.000182601 0.997967468 0.000061362 3.370065861 3.288078629 0.000000009 0.000000002 0.000006683 0.000000003 0.723807532 0.000000013 0.011644966 0.000022881 0.000000619 1.841927919 0.000718859 0.599836383 5.639690117 0.000000009 0.000000002 0.000000002 0.000000002 0.000000003 0.000000003 0.000000003 0.000000003 0.000179022 0.010059542 0.000000001 0.645931663 0.599182056 1.810063269 0.000000009 0.000000002 0.000000002 0.628697740 0.000000003 0.000000003 0.000000003 0.000000070 2.620453075 1.833666353 0.000000005 0.342798588 2.186565255 0.000240784 5.021405911 0.000000009 0.000000002 0.000000002 0.000000002 0.000000003 1.126333575 0.000000003 1.158030636 0.000000003 0.000075323 0.000000001 0.000000009 1.047435434 0.000038315 0.717032544 2.087803786 0.000000009 0.000000002 0.000000002 0.000000002 0.000000003 0.000000003 0.000000003 0.000000003 0.000000003 0.000000001 0.000000001 0.000000001 0.000000001 1.864634086 4.576580013 0.000000002 0.000000003 0.000000009 0.000000002 0.000000002 0.000000002 0.000000003 0.000000003 0.000000003 0.000000003 0.000000003 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 13.337656147 0.000000010 0.000000009 0.000000002 0.000000002 1.155248673 0.000000003 0.000000003 1.786437953 0.000000003 0.000000003 0.672987158 0.000000001 0.632346817 0.934943926 1.228974244 0.000000001 0.000000002 0.000000003 0.000000010 28.944667111 0.011225900 0.045657000 0.051739700 0.046981400 0.035380400 0.037287000 0.029976300 0.036637200 0.036161800 0.084729700 0.077769400 0.094855700 0.113333000 0.100365000 0.078646500 0.045101700 0.033774300 0.009784010 0.006225050 0.024368300