Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSDNOP00000019401pdb,1ouv,A,#1322171.8e-2034.921
ENSSSCP00000026888pdb,1ouv,A,#1322166.17e-2034.043
ENSDORP00000026273pdb,1ouv,A,#1322179.92e-2034.921
ENSPCAP00000013471pdb,1ouv,A,#1322031.71e-1836
ENSSHAP00000002559pdb,1ouv,A,#111824.65e-1833.514
ENSMLUP00000008740pdb,1ouv,A,#111826.7e-1834.595
ENSCGRP00000012773pdb,1ouv,A,#1322176.83e-1833.862
ENSXETP00000017668pdb,1ouv,A,#1322167.64e-1834.574
ENSSARP00000005271pdb,1ouv,A,#1362178.29e-1832.973
ENSMEUP00000011897pdb,1ouv,A,#1322168.38e-1832.979
ENSFCAP00000031550pdb,1ouv,A,#1322178.38e-1833.333

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1580.1310.7110.2140.3890.397

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6677966101694920.1050847457627120.006779661016949150.003389830508474580.0101694915254237000.206779661016949

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)