Protein COQ3

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSRNOP00000013384	pdb,3ccf,B,#1	144	311	4.54e-10	31.792
ENSRNOP00000013384	pdb,3ccf,A,#1	144	311	4.68e-10	31.792
ENSECAP00000014514	pdb,3ccf,B,#1	109	277	4.96e-10	32.759
ENSECAP00000014514	pdb,3ccf,A,#1	109	277	5.78e-10	32.759
ENSMLUP00000004744	pdb,3ccf,B,#1	117	285	7.38e-10	31.034
ENSMLUP00000004744	pdb,3ccf,A,#1	117	285	8.46e-10	31.034
ENSCGRP00001005517	pdb,3ccf,B,#1	141	309	2.54e-09	32.759
ENSMUSP00000029909	pdb,3ccf,B,#1	144	312	3.37e-09	32.759
ENSCGRP00001005517	pdb,3ccf,A,#1	141	309	3.43e-09	32.759
ENSMUSP00000029909	pdb,3ccf,A,#1	144	312	3.45e-09	32.759
ENSPVAP00000001591	pdb,3ccf,B,#1	145	312	5.6e-09	29.48

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.077	0.086	0.837	0.123	0.547	0.33

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.417883211678832	0.193430656934307	0.0492700729927007	0.00912408759124088	0.00182481751824818	0	0.00182481751824818	0.326642335766423

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.180332249 2.602399020 1.871782820 75.559152361 0.014383628 3.906599351 71.653538943 0.002479687 0.002723002 6.089385607 16.822905985 0.062279678 0.125826282 0.081057236 0.003290821 63.517491006 0.144020499 0.154485529 0.305664443 6.245266822 6.440558419 112.189105744 0.000011303 0.029989517 0.310467587 0.064965002 7.255719266 0.008743756 21.741118693 0.006890098 0.022545895 0.067019789 0.120198302 0.724283217 0.215574766 6.730688894 14.216299811 0.000271561 0.002686353 0.065098295 0.138351871 0.005512852 0.359256078 0.000814599 6.095691930 2.748130616 0.063946130 0.000001204 0.002437551 0.000255106 0.479031831 0.003463328 0.004970078 0.000036407 6.193765451 112.490091848 0.005950769 0.000009418 0.024532028 0.148393391 0.006192320 0.346012948 0.184024621 0.561481260 0.000256933 10.319343384 122.060673921 0.000000001 0.156829561 0.013299631 0.005357021 0.005966988 0.380894071 0.190156240 0.002754544 0.572359152 0.003052804 11.085785230 2.046677790 0.000000720 0.048653712 0.084178274 0.065397897 0.000000002 0.000020981 0.000005850 0.093372396 0.863868246 0.000000761 0.000027763 30.275622619 6.684164140 0.000000001 0.000000001 0.000000002 0.741109670 1.795601689 0.002912138 0.015160822 0.000525291 0.000003981 0.000000002 1.204675068 0.002071814 109.198436060 0.029460997 0.000000001 0.000000001 0.985688832 0.000000010 0.004015335 0.000000005 3.130991172 0.281564942 0.000000001 0.000000002 0.000000003 0.000000004 9.816317584 0.000075053 0.000055430 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.000000003 0.000000004 3.025615332 0.000017432 0.000000185 0.000055430 0.656775504 0.502816193 0.000000001 0.000000001 0.281112223 0.000073814 0.000029715 0.000000001 0.000000001 0.000000002 0.000000003 0.000000004 0.000007507 0.000000054 0.000000185 550.742451741 0.000798639 0.031448120 0.279276914 0.000007897 0.000000001 0.000000015 0.000000001 0.000071091 0.024520145 0.000000001 0.000000002 0.000005062 0.000000063 0.000001665 0.000000054 0.000000185 11.583567068 29.707515069 1824.724096072 0.000043349 0.051713533 0.089327477 0.174711872 0.049921831 1.473324886 0.321006498 0.004278907 1.135180346 0.289597102 3.478346772 6.059995228 11.308860239 0.000000079 0.000000185 0.000000082 0.000000106 599.771640784 0.000001804 0.131909000 0.119239000 0.084465500 0.087018700 0.091021300 0.098488800 0.080190900 0.086375100 0.079566300 0.060236100 0.037454000 0.024308600 0.011176900 0.001839400 0.000541841 0.001212200 0.000944835 0.001734110 0.002275400