Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
YML110Cpdb,4obx,A,#1733071.55e-178100
YML110Cpdb,4obx,D,#1733071.55e-178100
YML110Cpdb,4obw,D,#1733071.55e-178100
YML110Cpdb,4obx,C,#1733071.55e-178100
YML110Cpdb,4obx,B,#1733071.55e-178100
YML110Cpdb,4obw,A,#1743075.71e-178100
YML110Cpdb,4obw,B,#1763071.79e-176100
ENSSHAP00000004861pdb,4obw,D,#1653182.77e-6947.348
ENSSHAP00000004861pdb,4obx,A,#1653182.77e-6947.348
ENSSHAP00000004861pdb,4obx,D,#1653182.77e-6947.348
ENSSHAP00000004861pdb,4obx,C,#1653182.77e-6947.348

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0630.0880.8480.0620.4950.443

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3442940038684720.1953578336557060.009671179883945840.00193423597678917000.001934235976789170.446808510638298

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)