Protein COX17

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSSSCP00000047675	pdb,2rn9,A,#1	1	63	3.2e-37	93.651
ENSJJAP00000008656	pdb,2rn9,A,#1	1	63	9.85e-36	88.889
ENSSSCP00000047675	pdb,2lgq,A,#1	1	63	1.31e-35	90.476
ENSETEP00000011507	pdb,2rn9,A,#1	1	63	3.5e-34	85.714
ENSJJAP00000008656	pdb,2lgq,A,#1	1	63	5.8e-34	85.714
ENSETEP00000011507	pdb,2lgq,A,#1	1	63	1.84e-32	82.54
ENSMLEP00000014340	pdb,2rn9,A,#1	1	98	6.39e-32	62.245
ENSPEMP00000003033	pdb,2rn9,A,#1	1	63	1.89e-31	80.952
ENSODEP00000025811	pdb,2rn9,A,#1	1	63	1.2e-30	79.365
ENSXETP00000057694	pdb,2rn9,A,#1	10	67	4.89e-30	82.759
ENSCJAP00000043436	pdb,2rn9,A,#1	1	58	6.47e-30	82.54

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.056	0.155	0.789	0.276	0.439	0.285

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.156716417910448	0.111940298507463	0.0298507462686567	0.00746268656716418	0	0	0.0223880597014925	0.671641791044776

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

36.231793076 0.000000108 9.847712728 0.000000108 0.000000284 11.403978538 0.000000108 2.505040689 1.905505515 10.470097868 0.000000108 0.394175555 0.000000485 1.054637838 1.489610523 0.000000108 2.293600379 0.690045591 1.903646789 3.154772662 2.321212370 0.000000108 0.000000004 0.000000029 0.252621183 0.013351650 6.380817377 2.963029782 0.000000108 0.000000008 0.001534210 0.005939726 0.002928201 2.289985482 0.000424577 6.912678605 0.542253270 0.107980959 0.000270551 0.000559463 0.461010009 0.182166434 0.000001814 2.820722304 2.550052511 0.000000108 0.000000004 0.007075663 0.001912589 0.000108071 0.374666502 0.396012339 1.316470308 1.505724571 1.749292701 0.000000108 0.000000004 0.000000003 0.000000004 0.000000037 0.458155970 0.000007240 0.000045436 1.062761769 0.917762286 5.498040269 0.000000108 0.000000004 0.000000003 0.543336547 0.000000033 0.000000001 0.000000002 0.000002213 0.537926937 0.221235600 2.281083441 4.012901207 0.000000108 0.000000004 0.000000003 0.000000100 0.016863963 0.000000001 0.223607570 0.425514532 0.002273357 0.799881655 0.083713966 0.569690708 4.837618964 0.000000108 0.000000004 0.000000003 0.000000004 0.487352588 0.868447147 0.000573619 0.000000034 0.000016102 0.000013846 0.886998853 0.001348172 1.133271893 4.182037162 0.000000108 0.000000004 0.777646003 0.000000004 0.000000002 0.000000704 0.014483769 0.000008650 0.132055922 0.748062403 0.000000534 1.170736581 0.610860501 0.000126127 4.510253185 0.000000108 0.000000004 0.000000272 0.559087535 0.000000010 0.000000001 0.000000002 0.175937813 0.663888412 0.366900276 0.293347949 0.102597068 0.401138456 0.445321376 0.763499734 3.402920413 0.000000108 0.000000004 0.000000003 0.000000004 0.203876923 0.000000001 0.000000548 0.000000002 0.000000001 0.000078231 0.000000003 0.000000001 0.414261115 0.000000001 2.137193196 0.333364199 3.308843290 0.000000108 0.000000004 0.000000003 0.000000004 0.000000002 0.000000001 0.000000002 0.000000002 0.000000001 1.920055228 0.000000001 0.000000001 0.000972048 1.771397892 0.949868582 0.000000003 0.102394546 11.825989659 0.000000108 0.000000004 0.000000003 0.000000004 0.000000002 0.000424301 0.000064186 1.708904170 0.001149121 0.000009155 0.014268015 0.752618627 0.025137684 0.485653963 2.077013268 0.541258404 2.363050712 0.000000005 3.904297868 0.000923893 0.025314000 0.029764700 0.023439800 0.043712500 0.073014000 0.050440600 0.062547100 0.071699700 0.081118500 0.083378800 0.076070400 0.098958600 0.068914500 0.053988100 0.035638800 0.051721700 0.019572400 0.016326700 0.033455300