Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSPVAP00000003555pdb,2y69,Q,#1261694.09e-10093.056
ENSPVAP00000003555pdb,1ocz,D,#1261694.09e-10093.056
ENSPVAP00000003555pdb,3ag1,D,#1261694.09e-10093.056
ENSPVAP00000003555pdb,3ag2,D,#1261694.09e-10093.056
ENSPVAP00000003555pdb,3wg7,Q,#1261694.09e-10093.056
ENSPVAP00000003555pdb,3ag3,Q,#1261694.09e-10093.056
ENSPVAP00000003555pdb,2occ,Q,#1261694.09e-10093.056
ENSPVAP00000003555pdb,2ein,D,#1261694.09e-10093.056
ENSPVAP00000003555pdb,3abl,Q,#1261694.09e-10093.056
ENSPVAP00000003555pdb,3ag1,Q,#1261694.09e-10093.056
ENSPVAP00000003555pdb,3abk,D,#1261694.09e-10093.056

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0250.2120.7630.0250.5870.387

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3478260869565220.2474916387959870.02675585284280940.013377926421404700.006688963210702340.006688963210702340.351170568561873

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)