Protein COX6A1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSOARP00000010120	pdb,1oco,G,#1	13	96	1.1e-56	96.429
ENSOARP00000010120	pdb,1occ,G,#1	13	96	1.1e-56	96.429
ENSOARP00000010120	pdb,2occ,G,#1	13	96	1.1e-56	96.429
ENSOARP00000010120	pdb,1ocz,G,#1	13	96	1.1e-56	96.429
ENSOARP00000010120	pdb,3wg7,T,#1	13	96	7.58e-56	95.238
ENSOARP00000010120	pdb,2dyr,G,#1	13	96	7.58e-56	95.238
ENSOARP00000010120	pdb,1v54,G,#1	13	96	7.58e-56	95.238
ENSSSCP00000042190	pdb,1occ,G,#1	13	96	2.3e-54	92.857
ENSSSCP00000042190	pdb,2occ,G,#1	13	96	2.3e-54	92.857
ENSSSCP00000042190	pdb,1ocz,G,#1	13	96	2.3e-54	92.857
ENSSSCP00000042190	pdb,1oco,G,#1	13	96	2.3e-54	92.857

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.053	0.117	0.83	0.018	0.03	0.952

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.192307692307692	0.0989010989010989	0.0137362637362637	0	0.00549450549450549	0.00824175824175824	0	0.681318681318681

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

2.086469743 5.987283411 2.708307380 12.885190940 0.108522994 4.127103899 7.541595544 0.230561651 0.771555346 3.592629080 7.644726468 0.086148553 0.259356580 0.377066905 0.815337954 17.936565041 0.107744866 0.255494993 2.415606782 3.819678215 4.299171176 10.693212291 0.000093714 0.345943411 0.039082091 0.288700664 4.646289499 0.626260345 1.439061667 0.000388907 0.337141657 0.070384572 0.121114804 2.105014890 0.174019357 5.475133004 5.433917878 0.026456642 0.034018950 0.116704060 0.131240899 0.603783348 0.446852786 1.316516522 3.994768894 5.293713912 0.000316035 0.014989022 0.145296652 0.160131059 0.235606644 0.117547526 0.194127969 1.247772191 5.610389429 8.475029916 0.100625761 0.194464172 0.022559262 0.105346724 0.262696638 0.274586247 0.180333650 0.407109847 1.281838044 6.567495476 2.942165545 0.051367953 0.001595886 0.135766773 0.174431936 0.053607012 0.022338023 0.042336303 0.003057680 0.308619931 0.699036794 8.080608318 0.642218361 0.000005106 0.209250645 0.000118018 0.106977514 0.000125042 0.000348258 0.000143221 0.125142348 0.173892406 0.722209576 0.608974828 6.171567825 10.900163040 0.065333819 0.098184167 0.244971117 0.061426045 0.000576439 0.000207920 0.000028328 0.039155812 0.012014673 0.046509180 0.543421141 0.221470529 5.448211172 205.640307301 0.011085642 1.571295836 0.583363735 0.351455973 1.913992011 0.268463233 0.032389784 0.004354496 0.003244205 0.133815083 3.394135122 0.316049248 0.071097348 6.256640448 686.856547997 0.005625128 0.103410920 0.993569056 0.152007253 0.138315512 2.152536410 0.025634514 0.021167756 1.862125770 0.032472958 0.121841805 0.051392875 0.007421153 1.664429162 123.008906713 1.345917245 0.000358714 0.173442937 0.052995322 0.359203907 0.030105018 0.018881789 0.000058923 0.000032773 0.287998827 0.238663560 0.299784512 2.192463673 1.108077686 0.000518680 13.854993955 5.220492699 0.850011099 0.000012574 0.000033933 0.001076762 0.049811946 0.001772231 0.000154409 0.337750930 0.148916086 0.000078990 0.095727259 0.000144422 1.054796588 2.015698395 0.265937762 2.788489290 0.029917959 12.830463389 7.225951639 0.000012397 0.000014793 0.000130527 0.002161313 0.000295343 0.000746875 0.005685798 0.540548938 0.043857575 1.543003457 0.127345192 4.088057177 1.537952017 0.000723744 0.004465244 20.741704866 0.893086500 11.422373450 0.000039193 0.104353000 0.067588800 0.067703900 0.084603200 0.076530100 0.080156600 0.071464200 0.076274500 0.071630500 0.079515700 0.071094400 0.054987000 0.041577500 0.021854700 0.004954690 0.001317640 0.009011210 0.010256800 0.005086720