Protein COX6B1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMLUP00000010350	pdb,1v55,H,#1	8	86	3.6e-55	96.203
ENSMLUP00000010350	pdb,3wg7,U,#1	8	86	3.6e-55	96.203
ENSMLUP00000010350	pdb,1v54,H,#1	8	86	3.6e-55	96.203
ENSMLUP00000010350	pdb,3ag1,U,#1	8	86	3.6e-55	96.203
ENSMLUP00000010350	pdb,2dyr,H,#1	8	86	3.6e-55	96.203
MGP_CAROLIEiJ_P0078750	pdb,2dyr,H,#1	8	86	3.13e-54	93.671
MGP_CAROLIEiJ_P0078750	pdb,3ag1,U,#1	8	86	3.13e-54	93.671
MGP_CAROLIEiJ_P0078750	pdb,1v55,H,#1	8	86	3.13e-54	93.671
MGP_CAROLIEiJ_P0078750	pdb,3wg7,U,#1	8	86	3.13e-54	93.671
MGP_CAROLIEiJ_P0078750	pdb,1v54,H,#1	8	86	3.13e-54	93.671
ENSCLAP00000021657	pdb,3ag1,U,#1	9	87	6.45e-54	92.405

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.016	0.098	0.885	0.015	0.161	0.824

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.373684210526316	0.0789473684210526	0.0105263157894737	0.0105263157894737	0	0	0	0.526315789473684

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

2.047998925 0.000000652 2.368905228 0.000000014 0.000000002 4.199888569 0.000000014 0.000000011 0.000208325 10.778103621 0.092076915 0.002158080 0.162135000 0.142002675 1.006191742 0.366640481 0.255729302 0.004825220 0.811157599 5.507655580 5.975918769 0.000000014 0.200964808 0.168911755 0.000005738 0.138020075 6.175783773 0.194540534 0.000000014 0.000000056 0.000031942 0.478362480 0.000053755 0.789658837 0.178389381 4.394922077 0.000000014 0.000000014 0.064755740 0.024741678 0.303905377 0.106741945 0.259049299 0.817458307 4.968936477 0.000000014 0.249106819 0.050839224 0.175090837 0.027259074 0.170154882 0.215872673 0.290382782 0.428899123 5.120941150 0.000000014 0.000000003 0.000000005 0.183417111 0.000169027 0.429501931 0.000090476 0.032399479 0.355951426 1.138081502 5.381066809 0.000000014 0.000000002 0.053244478 0.024581934 0.283834843 0.036633354 0.162653857 0.063430621 0.065268055 0.387480643 0.289032508 8.664774712 0.000000014 0.017127945 0.000027699 0.000032780 0.456878086 0.027697899 0.000000072 0.000000070 0.282783917 0.352186296 0.615536069 0.807459387 5.497782035 0.000000014 0.000751905 0.137884889 0.000001681 0.689790028 0.000000816 0.000000188 0.308669280 2.098672366 0.698759691 0.212254251 1.218571057 1.355260340 13.641525327 0.000000014 0.186723968 0.000000001 0.782440155 0.007573067 0.000000005 0.493101603 0.000936692 0.159758342 0.000009784 0.266151834 0.022239828 0.000000386 0.659925908 10.608730045 0.000000014 0.000000002 0.000000001 0.000000002 0.972593999 0.000000001 0.000000002 0.000000001 1.817826295 0.930369992 0.000000284 0.000000002 0.888275887 0.000000001 0.000000006 10.601644902 0.000000014 0.000000002 0.000000001 0.000000002 0.000000002 0.963588530 0.000000002 0.383919599 0.719936079 0.580629876 1.460035851 0.000000003 1.024312328 0.000000017 2.774042380 0.000000006 88.553432569 0.000000014 0.000000002 0.000000079 1.652864434 0.000000002 0.000000012 0.000000002 0.246453402 0.331447181 0.503686977 0.000766309 0.000000928 0.682738093 0.000000001 3.556762069 0.000000006 5.604218205 73.554029828 0.000000014 0.000000002 0.653048617 0.000000002 0.000000002 0.000000002 0.000000002 0.000000001 0.393029418 0.389775386 0.000000001 0.922329256 0.780384960 1.146375409 4.113002781 0.000000006 9.320105708 6.922019365 11.539834720 0.007141410 0.057939000 0.075921300 0.046511800 0.046077500 0.082520700 0.057382900 0.085680700 0.074154500 0.081882800 0.103205000 0.071566200 0.077976900 0.068617400 0.016687200 0.015928000 0.005921950 0.009572120 0.005803480 0.009508940