Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSECAP00000014225pdb,2aex,A,#19343094.328
ENSCHOP00000011315pdb,2aex,A,#1104410092.834
ENSTSYP00000006339pdb,2aex,A,#1107441094.925
YDR044Wpdb,1tlb,Q,#133280100
YDR044Wpdb,1tlb,A,#133280100
ENSPSIP00000004032pdb,2aex,A,#11306084.967
ENSMOCP00000019527pdb,2aex,A,#1110442086.486
ENSPCOP00000004875pdb,2aex,A,#1108442093.433
ENSPANP00000001888pdb,2aex,A,#1118434097.792
ENSMGAP00000015188pdb,2aex,A,#11304083.553
ENSNGAP00000005335pdb,2aex,A,#1108442088.955

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1990.2930.5080.5390.1620.299

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5791190864600330.07830342577487760.05383360522022840.01305057096247960.01141924959216970.00326264274061990.009787928221859710.251223491027732

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)