Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSANAP00000002888pdb,6csc,A,#128407072.33
FBpp0070871pdb,1csr,A,#191519072.96
MGP_PahariEiJ_P0088022pdb,6csc,B,#131460087.907
T20G5.2pdb,6csc,A,#132463070.37
T20G5.2pdb,2cts,A,#132462071.694
ENSHGLP00100010700pdb,2cts,A,#111378073.227
ENSACAP00000007463pdb,3enj,A,#124460089.931
ENSMEUP00000005170pdb,1csh,A,#1183443092.72
ENSMEUP00000005170pdb,3enj,A,#1183450095.896
ENSPMAP00000010036pdb,6csc,B,#133345082.428
MGP_PahariEiJ_P0088022pdb,6csc,A,#128460087.991

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.2290.4920.2790.5430.3360.121

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6630265210608420.05772230889235570.007800312012480500.00156006240249610.003120124804992200.266770670826833

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)