Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSPCOP00000028048pdb,1ppj,D,#185325097.925
ENSPCOP00000028048pdb,2a06,Q,#185325097.925
YOR065Wpdb,3cx5,D,#1623090100
ENSPCOP00000028048pdb,1ntz,D,#185325097.925
YOR065Wpdb,1ezv,D,#1623060100
YOR065Wpdb,4pd4,D,#1623090100
ENSPCOP00000028048pdb,1ntk,D,#185325097.925
ENSPCOP00000028048pdb,4d6t,Q,#185325097.925
ENSPCOP00000028048pdb,1bgy,P,#185325097.925
ENSPCOP00000028048pdb,2a06,D,#185325097.925
YOR065Wpdb,1p84,D,#1623070100

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1940.5260.2810.340.4480.213

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.6339712918660290.07894736842105260.03349282296650720.007177033492822970.01196172248803830.01196172248803830.007177033492822970.215311004784689

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)