Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSMLUP00000007803pdb,3k9v,A,#151514084.483
ENSFDAP00000007323pdb,3k9y,B,#11444082.207
ENSPEMP00000015190pdb,3k9y,A,#154514089.371
ENSPEMP00000015190pdb,3k9v,A,#151514089.009
ENSPVAP00000008373pdb,3k9v,B,#1151510082.967
ENSTTRP00000003602pdb,3k9v,A,#151514083.621
ENSDORP00000015169pdb,3k9v,B,#153515081.857
ENSGALP00000043744pdb,3k9y,A,#149504071.554
MGP_PahariEiJ_P0067405pdb,3k9v,A,#151514094.181
ENSNLEP00000008560pdb,3k9y,A,#154514083.731
ENSTSYP00000009672pdb,3k9y,B,#1149512086.264

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0790.180.7410.0520.0540.894

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.2341356673960610.1167031363967910.03574033552151710.01167031363967910.00875273522975930.00875273522975930.009482129832239240.574762946754194

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)