Protein DAP3

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSCSAP00000013623	pdb,4r0y,B,#1	546	655	9.36e-73	99.091
ENSOPRP00000000894	pdb,4r0y,B,#1	781	899	2.46e-72	92.437
ENSP00000316377	pdb,4r0y,B,#1	792	901	3.09e-71	99.091
ENSTGUP00000010333	pdb,4r0y,B,#1	790	899	4.43e-71	99.091
ENSHGLP00100007934	pdb,4r0y,B,#1	797	906	1.13e-70	98.182
ENSTBEP00000006108	pdb,4r0y,B,#1	791	900	1.81e-70	98.182
ENSCHOP00000006076	pdb,4r0y,B,#1	788	897	5.95e-70	98.182
ENSCAPP00000014966	pdb,4r0y,B,#1	751	860	1.36e-69	97.273
ENSCSAP00000013623	pdb,4r0y,A,#1	546	651	4.2e-69	99.057
ENSOPRP00000000894	pdb,4r0y,A,#1	781	895	8.4e-69	92.174
ENSPCAP00000009430	pdb,4r0y,B,#1	792	901	5.08e-68	95.455

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.034	0.059	0.907	0.009	0.06	0.931

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.0327335790158248	0.123347062649035	0.0507262085410796	0.0223282029048342	0.0175590721872968	0.0231953175807501	0.0177758508562757	0.712334706264904

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.244113600 0.184980149 4.369444945 0.000000072 0.002410419 6.645016733 0.029247395 0.043276035 0.313197107 4.715563406 0.049857462 0.019353311 0.045785071 0.072858253 0.592476627 0.206439638 0.103087929 0.055979384 1.152655528 4.191765343 5.345758503 0.010201086 0.007315175 0.016745103 0.060842202 0.165656633 5.110160124 0.953885598 0.005532084 0.003377525 0.009918235 0.011717538 0.084964103 1.556603405 0.057133568 5.275874777 0.000000072 0.006947685 0.006121168 0.000547885 0.049828463 0.145489822 0.053746974 0.593395125 4.748825762 0.000000117 0.010636422 0.000204760 0.000075713 0.033964524 0.046917942 0.010546256 0.032341477 0.595561918 4.327437361 0.000000072 0.003159492 0.001510605 0.000072190 0.014957486 0.012413509 0.139424452 0.037768501 0.048672988 0.204246225 4.408147184 0.000000072 0.002709863 0.003223681 0.000002482 0.088489160 0.015602916 0.020626254 0.012266918 0.017443249 0.062028346 0.263954775 5.841910557 0.000000072 0.018124109 0.002339596 0.000031611 0.037880240 0.017371133 0.099167410 0.013435699 0.000039353 0.007264213 0.001694848 0.000373750 9.124982847 0.000000072 0.048708216 0.000004707 0.000001658 0.000278921 0.003673804 0.411927793 0.000000449 0.021767682 0.000316860 0.101454665 0.310062734 0.016052058 11.849498328 0.000000072 0.000438576 1.274340702 0.000092450 0.057314456 0.109619299 0.068160253 0.000023561 0.000001088 0.000002583 0.050596297 0.342521741 0.007699506 1.496304064 12.699584136 0.000000072 0.127290085 0.012477150 0.229939028 0.141196702 0.070362551 0.009901788 0.000002083 0.001979790 0.000000096 0.005984214 0.080917907 0.385475360 0.000000006 0.119241366 33.326742512 0.000000072 0.008463755 0.000062464 0.021725305 0.197074733 0.020406083 0.245921240 0.000000001 0.000000001 0.074685189 0.000128217 0.000000001 0.000000020 0.622753812 4.860287573 0.000000169 87.072520475 0.000000072 0.000000003 0.040604149 0.681686317 0.064595399 0.268107155 0.000009812 0.000191303 0.001814563 0.023499527 0.036051776 0.001296476 1.577434392 0.048135480 16.819322843 0.000087546 18.391673220 9.988504558 0.000000072 0.004317388 0.169550344 0.095809440 2.424091722 0.830426167 1.428185648 13.062102681 1.831037154 39.672206443 10.769918634 0.761331143 5.043329826 0.072885324 8.421176570 19.081273279 15.407164458 0.081366202 201.131889988 0.001395420 0.038861000 0.048468200 0.060633900 0.093099200 0.089474300 0.094428200 0.087099300 0.101981000 0.106683000 0.112947000 0.092852500 0.048096200 0.017641000 0.002123290 0.000591732 0.001564110 0.000831634 0.000657131 0.000571923