Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSSSCP00000016425pdb,4ah6,A,#140607087.436
ENSHGLP00000009317pdb,4ah6,A,#142630089.304
ENSMEUP00000001431pdb,4ah6,A,#141599073.98
ENSVPAP00000002391pdb,4ah6,A,#141629089.813
ENSDARP00000119212pdb,4ah6,A,#166651065.87
ENSPFOP00000004262pdb,4ah6,A,#158643066.041
ENSMODP00000005167pdb,4ah6,A,#144631080.782
ENSFALP00000008327pdb,4ah6,A,#131619072.156
ENSPSIP00000019011pdb,4ah6,A,#143616073.98
ENSPMAP00000009896pdb,4ah6,A,#11583061.092
ENSCAPP00000006317pdb,4ah6,A,#11467064.906

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0990.2920.6090.0670.510.423

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.46290571870170.03091190108191650.007727975270479130.003091190108191650.0007727975270479130.0007727975270479130.0007727975270479130.493044822256569

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)