Protein DDX28

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMNEP00000042903	pdb,3ber,A,#1	11	230	9.58e-158	99.091
ENSMFAP00000030809	pdb,3ber,A,#1	11	230	2.12e-157	99.091
ENSCATP00000029933	pdb,3ber,A,#1	11	230	6.13e-157	97.273
ENSPTRP00000088784	pdb,3ber,A,#1	11	230	3.67e-156	99.091
ENSOARP00000022403	pdb,3ber,A,#1	27	245	3.24e-151	96.347
ENSTBEP00000011871	pdb,3ber,A,#1	11	230	2.61e-144	93.182
ENSMODP00000022722	pdb,3ber,A,#1	20	231	1.88e-143	93.868
ENSSHAP00000012648	pdb,3ber,A,#1	70	288	5.09e-143	91.781
ENSTGUP00000009694	pdb,3ber,A,#1	12	230	8.58e-143	89.954
ENSFALP00000011892	pdb,3ber,A,#1	30	239	1.36e-142	93.81
ENSACAP00000010501	pdb,3ber,A,#1	4	222	8.4e-142	89.954

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.079	0.27	0.651	0.245	0.283	0.472

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.416666666666667	0.217741935483871	0.0981182795698925	0.0497311827956989	0.0161290322580645	0.00268817204301075	0.00268817204301075	0.196236559139785

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.768640918 0.000124561 1.362166899 0.203921654 0.029562398 6.158786894 0.318093160 0.456141008 0.343708438 5.548799297 0.184195288 0.142326230 0.268429651 0.340129291 0.072416803 0.779242336 0.534885481 0.455694665 0.521795961 8.130358193 6.260110564 0.034286227 0.015306831 0.001743440 0.142848932 0.509178546 7.416536570 0.512738714 0.000000005 0.002734714 0.013360130 0.305234448 0.511509556 0.556415284 0.195341550 9.059244703 0.000000005 0.077659112 0.058155468 0.000543502 0.299221850 0.408696669 0.607983374 0.222043798 6.572871496 0.000093484 0.003717738 0.005259508 0.113299942 0.220097370 0.050867084 0.506663763 0.149403126 0.188983857 5.487222701 0.000000005 0.004772810 0.075686896 0.000055059 0.027597120 0.148476125 0.363002456 0.423371637 0.318898537 0.124140062 5.798518272 0.000000005 0.026407090 0.000093985 0.046861706 0.035243301 0.028691503 0.097534330 0.113982410 0.271660135 0.190632321 0.276635180 6.223236373 0.000000005 0.036790520 0.037800207 0.000000376 0.152164397 0.107140386 0.163961821 0.039520722 0.232949209 0.478455105 0.006242225 0.147009747 9.884528592 0.000000005 0.018691655 0.000006681 0.000020761 0.213229497 0.310197557 0.179644599 0.611684186 0.306483936 0.105709853 0.383697084 0.030425925 0.064476823 12.289273270 0.000000005 0.000000001 0.000000002 0.000000002 0.000136304 0.000073731 0.514576016 0.995238795 0.044851374 1.026999904 0.003275561 0.420761454 0.581909743 1.404170681 8.078989856 0.000000005 0.000000018 0.070474832 0.028719228 0.988919100 0.740399533 0.013683005 0.042698790 0.525230770 0.020128954 0.563415479 0.000000897 0.539593180 0.587288578 2.629137775 7.474319286 0.000000005 0.235395340 0.000000016 0.000000002 0.000000002 1.101026855 0.000000001 0.058989224 0.434058779 0.415724728 0.000000001 0.000000010 0.408024185 0.879336870 9.458624584 6.154027566 4.824993143 0.000000005 0.161749452 0.188746867 0.000000002 0.017334733 0.884644938 0.259743757 0.007998788 0.000007976 0.666584953 0.075035028 0.082898376 1.289511620 3.437073143 1.556736629 7.758426648 0.002802687 44.637570983 0.000000005 0.018824378 0.285329493 0.000000002 0.675620455 0.000000037 0.000084217 0.055924561 0.000000009 0.346526222 0.287366247 1.313912094 0.988199994 1.654481013 0.000000009 0.000000545 0.000000030 7.227271157 37.626795350 0.018374900 0.125525000 0.062556800 0.045061100 0.063920800 0.061556900 0.077613800 0.055112100 0.066115700 0.078322500 0.097278300 0.091154500 0.088584700 0.041729400 0.010715300 0.003349790 0.003317870 0.002604510 0.003858580 0.003247060