Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSMICP00000037163pdb,4fc6,A,#14277092.701
ENSMICP00000037163pdb,4fc6,C,#12277092.754
ENSTTRP00000008694pdb,4fc7,C,#12277089.493
ENSSSCP00000033860pdb,2zat,A,#1292790100
ENSMICP00000037163pdb,4fc7,B,#13277092.727
ENSOGAP00000001446pdb,4fc7,A,#15277090.842
ENSMFAP00000000208pdb,4fc7,C,#12277098.551
ENSP00000263278pdb,1yde,L,#14258099.608
ENSFCAP00000007696pdb,4fc7,C,#12277088.768
ENSPPYP00000007823pdb,4fc6,B,#13278092.78
ENSPPYP00000007823pdb,4fc7,C,#12278092.806

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0720.2690.6590.0030.0130.985

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.07493368700265250.08554376657824930.01923076923076920.0132625994694960.009283819628647210.0132625994694960.01061007957559680.773872679045093

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)