Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSXETP00000062763pdb,4jgd,A,#132394069.697
ENSFCAP00000017804pdb,3kvm,A,#130395091.257
ENSXETP00000062763pdb,2prm,A,#132394069.697
ENSMODP00000003011pdb,2prm,A,#126391081.694
ENSOCUP00000007817pdb,2fpy,A,#132395091.758
ENSDORP00000012974pdb,3kvl,A,#136394089.694
ENSSTOP00000028109pdb,2prm,A,#130395090.71
ENSSTOP00000028109pdb,3w7r,A,#130395090.71
ENSPCOP00000014796pdb,4js3,A,#131395090.685
ENSSHAP00000020003pdb,4jts,A,#131395080
ENSBTAP00000026495pdb,4jgd,A,#132397077.174

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0760.3970.5270.1670.580.253

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.7053406998158380.02025782688766110.0018416206261510100.005524861878453040.001841620626151010.003683241252302030.261510128913444

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)