Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSMNEP00000001757pdb,1few,A,#1672396.98e-10995.954
ENSMNEP00000001757pdb,1g73,A,#1562122.69e-10696.815
ENSMNEP00000001757pdb,1g73,B,#1562122.69e-10696.815
ENSCCAP00000038767pdb,1few,A,#1652373.27e-10391.329
ENSCCAP00000038767pdb,1g73,B,#1542102.24e-10293.631
ENSCCAP00000038767pdb,1g73,A,#1542102.24e-10293.631
ENSPCAP00000005804pdb,1few,A,#1672392.01e-10190.173
ENSOGAP00000018618pdb,1few,A,#1552273.15e-10189.595
ENSLAFP00000025935pdb,1few,A,#1652373.88e-10189.017
ENSCHOP00000004379pdb,1few,A,#161786.1e-10188.439
ENSSTOP00000013370pdb,1few,A,#1622346.39e-10189.017

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1430.3210.5370.1440.40.456

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.5403899721448470.1197771587743730.008356545961002790.002785515320334260.002785515320334260.002785515320334260.0111420612813370.311977715877437

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)